Gene detail

Detail information of GWHGAAZE012377

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010253516.1	7.8594E-52	PREDICTED: NEDD8-specific protease 1 [Nelumbo nucifera]
Swissprot	tr\|Q9LSS7\|RUBP1_ARATH	1E-45	NEDD8-specific protease 1
trEMBL	tr\|A0A067LIP9\|A0A067LIP9_JATCU	4E-50	Uncharacterized protein {ECO:0000313\|EMBL:KDP44124.1}
TAIR10	AT5G60190.1	4E-39	Cysteine proteinases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	84585865	84587102	-
GWHAAZE00000003	mRNA	84585865	84587102	-
GWHAAZE00000003	exon	84585865	84586139	-
GWHAAZE00000003	exon	84586247	84587102	-
GWHAAZE00000003	CDS	84586247	84587102	-
GWHAAZE00000003	CDS	84585865	84586139	-

Transcript Sequence
>GWHTAAZE012391 ATGGACGATGAGGATTGCATAACCCAAAATGACGCCACGGCGAAGAAGAATGACAATATTATGAGTTACAATGGCAGGGTACCACAAAAGTTCTGCTTTGACATCGCCAAAGGACTACACGATGACGATGCGACTTGCAATGGCGTTGTGCCAAAAAAGGATGAGGAACCCACATTTAGCAGTGGCGTTCCCTCAAAAATGGACGAGGATATTGTGATCAACGATGGCACGGTCACAGTGCTACAGAAGTCCTACTTCGACTTTTTCAAAGGACTAGAGGATGATGGTGAGGATGTTACAACTTACAGTGGCACCATGGCGAAAAAGTCGAATTTGGATCTCGAAAGAATAGCTGATGAGAATAATGTGACTAACAATGGTGCAGTGCCAAAAGAGTCCAATTCGGGCAATTTTGAATATATGGTAGATGAGGATGTCGCGACTTATGATGGGATCACAATAAAAAAATCTGATCTAGACTCTCTACAAGACGCCAATTACTTAAGTGACAACGTTATAGGATTCTATTTCAGCTACCTCTCTTCTACCATTCAATCCACGGACATATTTTTGGTTTCGCCTTCTCTTTCATTTTTACTTGCAACACTCCCCCCCTTCGACGAAAGCTACAAAGCCCTCATTGAGCCTCTCAAATTACCCGAAAAACAGCTCATAATTTTCACGGTCAATGATGGACAAGGAATCCATTGGAGCTTGCTTGTCTATCATAGAGGCACAAACACATTCATCCATCATGACAGCATTAGGGGGCAACATAGATCCTACGCGTACAACTTCTATGAAACGGTGAAGCAGTTTGTGGGTCGATCCATTTGTAGTTCATTATTTGGACCCCTGGAATACCTAGCACGTGACGATGGTCCACTATTTCATGACGCGTGTTTTACGCCGCAACAGAGTAATACTTGCGATTGTGGTCTATTTGTGATGGCAATTGCTAGGGCTATTTGCGATTGGTACTTAAATGGGCCAAGAAAAAGAGATGAACTTTGGTTCTCTGATTTAAAGAAGACGATTGATCCTGCTTCTGTTGAGTTGGGAATGCGCGGTGAAGTTTTTAAGCTCATTGAAGACCTAAGGAATGGCACATTGGCTCAACCACCCGCATAA

Network for GWHGAAZE012377

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02902.20	Peptidase_C48	167	321	3.30E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008234	molecular_function	cysteine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.176
	SRR3591706	second leaf	0.201
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.636
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.132
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.425
	SRR8316896	Juvenile bud stage	0.101
	SRR8316897	Juvenile bud stage	0.186
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.229
	SRR8316901	Third green stage	0.630
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.539
	SRR8316903	Complete white stage	0.090
	SRR8316902	Silver flowering stage	0.074
	SRR8316904	Silver flowering stage	0.091
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.054
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.268
SRP132670	SRR6706286	Control	0.020
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.057
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.104
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.046
	CNS0095595	Whole white alabastrum(diploid) 2	0.115
	CNS0095596	Whole white alabastrum(diploid) 3	0.040
	CNS0095597	Whole white alabastrum(diploid) 4	0.118
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.100
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.255
	CNS0095603	Golden flower (diploid) 3	0.098
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.039
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.059
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.063
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.027
	CNS0095610	Silvery flower (tetraploid) 1	0.195
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.062
	CNS0095613	Golden flower (tetraploid) 1	0.073
	CNS0095614	Golden flower (tetraploid) 2	0.130
	CNS0095615	Golden flower (tetraploid) 3	0.028
CRA001975	CRR073297	Stem 1	0.170
	CRR073298	Stem 2	0.502
	CRR073299	Stem 3	0.176
	CRR073300	Leaf 1	1.005
	CRR073301	Leaf 2	0.357
	CRR073302	Leaf 3	0.666
	CRR073303	Juvenile bud 1	0.281
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.409
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.122
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.093
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.005
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.075
	CRR073318	Tawny withering 1	0.042
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000