Gene detail

Detail information of GWHGAAZE012369

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009366894.1	0	PREDICTED: disease resistance protein RPM1-like [Pyrus x bretschneideri]
Swissprot	tr\|Q39214\|RPM1_ARATH	0	Disease resistance protein RPM1
trEMBL	tr\|B9SHP9\|B9SHP9_RICCO	0	Disease resistance protein RPM1, putative {ECO:0000313\|EMBL:EEF36876.1}
TAIR10	AT3G07040.1	2E-176	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	84513323	84516188	+
GWHAAZE00000003	mRNA	84513323	84516188	+
GWHAAZE00000003	exon	84513323	84515039	+
GWHAAZE00000003	exon	84515134	84516188	+
GWHAAZE00000003	CDS	84513323	84515039	+
GWHAAZE00000003	CDS	84515134	84516188	+

Transcript Sequence
>GWHTAAZE012383 ATGGCCTCAGTTGCACTAGACCTGTTGATTGGCAAGGTAGCTTCGATCCTAGAAAGTGAAGTGTTGCTGATAGGAGGTGTTCGCGATGAGCTTGATGAACTCAAGCGAGAATTGACGAGCATGCGATTATTTCTAGAGGATGCTGATACAAAGACAGACCTTTCCGGAGTTGAGAAGGCGTGGGTGGCAGACGTAAGAGACATGTGCTACCCTGTTGAAGATATCATGGAAGAGTTCATCTATCACATGAATAAGCCTTATCCCAAGGAGGGGGGCAAATTCCTTAAGCCTCTCTATCAAATGATTCGCATTCCTAAGAATCTATGGGTCAAGCACCGAGTGGCCACAAAGTTACAGGCCATCAATAAGAAGATCAAGTCCATTCCCGAGAGAAGCCAACGCTATGGTGTCTCTCACATCGAAGGAACAAGCTCTCGCCGTGCTGATGATGATGGCCAAAGACGACGACTGCAGAACCTGAGTGAGGCTCTTGTCTTCGCCAAAGATGACCATCTTGTGGGGATAGAAGATGACACTCGCCAATTAGTGGAGTGGTTGACACAAGGAGGATTAGGACTCACTTCCATTTCTGTGGTTGGGATGGGTGGTTCTGGTAAGACTACCCTGGTTTCCAAAGTCTACAACACCCACGCAGTCAAGCAGCATTTTCATTGCTATGCTTGGATCACTGTCTCTGAAAGATACGTCGTTGAGGACTTACTCAAAAGGATGATTAAGGAATTCTACAGTTCTCGTAAGGAGAATAATAATGTTCCTGTGGATTTGAGTTCCAAGACATTCAAAGAGCTGCTCGAGATTCTTCTGGATTACTTACGCCCAAGAAGGTACGTGGTTGTGTTTGATGATGTGTGGACAAATAACCTCTGGGACGATATCAATGTCGCACTACCAGATGAGGGACTTGGAAGCCGGGTCATCCTCACAACTCGAAAAGAACAAGTAGCTTCATCTTTTCTTGTATGGAAAAGCTATGTTCATCGTGTTAAACCATTGGAACCGAGTGAAGCATGGAACCTCTTTTGCTTGAAAGCATTTTCAACTAACCCAAATAAATCTTGCCCCGAAGAGCTCCAAGCCGTAGCACCACAATTGGTTGCTAAATGCGGAGGACTACCTCTAGCAATTTTGGCTTTGGGCGGTTTAATGTCTTCAAGAAAACAAGTGGATGACTGGATTGCAATTAACCATGGGTTGAATCAAGAGTTGAGCAAAGATGACCTAGTGAAGAGCATTTTGTTGCGCAGCTTCATTGATTTGCCATTCCAACACAAGTGCTGCTTTTTGTATTGTTGTATATTTCCAGAAGATTATTTCATCAAACGGAAGAGGGTCATTAGACTTTGGATGGCGGAAGGGTTTGTGGCGGATCATCATCAACAGAGAGCAACAAGAACTCCAGAACAAGTAGCAGATGGCTACCTTATGGAACTCGTGCACAGAAACATGCTTCAAGTTGTAAGAAGGAACCATGTAGGAAGGCCAAAAGTTTTAAAAATGCACGACCTTATGAGGGAACTTGCTCTTTTAAGATCAAAAGAAGAGAACTTATGTACTGTATCTGATGGACAAGAAGCAAGTGAAGAGGAGATTAGTAGAGCACGCCGCTTGTCAATTCAATTAAGTGCCACCGAAGAATTAGTAACACCAGCTAATGACCGTATGTCACAACTTCGCTCTCTCTTTGTGTTTATTGCAGGTATAATACCTCCTTTTGTTTATACATTGCCATCTAGCTTTAGACTGCTGAGAGTATTGGATCTGGAAGACATACCGATCACGAATTTACCTGATAACATAGTTGATCTATTTAATTTGCGGTACTTGAACTTGGAGAGCACTCTTGTGAAGGAACTTCCTAAATCGATTGGAAGATTGAGCAATCTACAAACCTTGAGAACTGGAGCCACAGAAATACAAGTGTTACCTACTGGGATAACAAAGTTGCTCAAATTGCGACATCTAAGTATGGCCGGTGCACCGTGGCCAGTGCCATCAAGTATTAGCAAGCTAAACAACCTGCAGGTGCTTGATTGTGTCGAAGCAGAACCAGCCTTGCTGAAGCAACTAAAGGACATGACTCAGCTTACAAGGATTGGGATAACAAACTTGAGAGAAGCAGATGAGGAGGATTTGTGCATTTCAATCCAAAGGATGAACCTCCTTCGCCAATTATTCTTGAAGGTAGCTAATGAGGAGTACTTGCGAATTAATGCTCTGCCTTGGGCTCCTCCCTGCCTTGGAAAAATGGTTTTAGTGGGAAAATTGGATGGTGTTCCACAGTGGTTTGGATGGCTTCAAAACCTTCTGAGTTTGCATTTGATTCAGTCTAAATTGAGCGAAGATTTAATCACGCACCTCCAAGCACTGCCCAATTTGACAAAACTTGTGCTTAATGATGCATGTGAAGGGAACCAGTTATGCTTCTCTGCAGGGTTTAGTAAGCTTAAGGATTTGCGGTTTAAGAAGCTACCTCAACTGAAGGAGATAATAATAAACGAGGGAGTGATGCCGGGCCTCCTAAAACTGAGCTTCAAAAAGTGCACGCAATTGAAGATGTTGCCCAGTGGTATTGAGCATCTTACTCATCTTGAACTATTAGAATTGGATCGTGTTTCGACTGAACTCCTAGAGCGCATACGTGGGGAAGAAAGCATTGATCGCCCAAAGGTTCGACACATCCCCAACATCATCCACTACTTGCAATTTTCGCCATTTGGGTTCTACTATGAAAGCTTGTCACAATTCCAATGA

Network for GWHGAAZE012369

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18052.2	Rx_N	6	85	3.80E-19
PF00931.23	NB-ARC	176	411	2.20E-60

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13457	RPM1, RPS3	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.781
	SRR3591706	second leaf	2.626
	SRR3591707	mature leaf	2.540
	SRR3591708	Shoot apex	2.077
	SRR3591709	Stem	13.381
	SRR3591710	White floral bud	3.323
	SRR3591711	White flower	3.091
	SRR3591712	Green floral bud	2.480
	SRR3591713	Yellow flower	0.853
SRP173429	SRR8316895	Juvenile bud stage	0.632
	SRR8316896	Juvenile bud stage	0.917
	SRR8316897	Juvenile bud stage	0.672
	SRR8316894	Third green stage	0.552
	SRR8316900	Third green stage	1.041
	SRR8316901	Third green stage	1.425
	SRR8316898	Complete white stage	0.336
	SRR8316899	Complete white stage	1.276
	SRR8316903	Complete white stage	0.761
	SRR8316902	Silver flowering stage	0.350
	SRR8316904	Silver flowering stage	0.964
	SRR8316905	Silver flowering stage	0.350
	SRR8316906	Gold flowering stage	1.031
	SRR8316907	Gold flowering stage	1.090
	SRR8316908	Gold flowering stage	2.922
SRP132670	SRR6706286	Control	0.976
	SRR6706287	Light intensity 50%	0.571
	SRR6706288	Light intensity 20%	0.672
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.661
	CNS0095593	Slightly white alabastrum(diploid) 2	1.982
	CNS0095594	Slightly white alabastrum(diploid) 3	1.200
	CNS0095595	Whole white alabastrum(diploid) 2	1.459
	CNS0095596	Whole white alabastrum(diploid) 3	1.063
	CNS0095597	Whole white alabastrum(diploid) 4	0.864
	CNS0095598	Silvery flower (diploied) 1	1.540
	CNS0095599	Silvery flower (diploied) 2	1.393
	CNS0095600	Silvery flower (diploied) 3	1.545
	CNS0095601	Golden flower (diploid) 1	0.836
	CNS0095602	Golden flower (diploid) 2	1.267
	CNS0095603	Golden flower (diploid) 3	0.783
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.550
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.717
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.789
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.695
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.678
	CNS0095610	Silvery flower (tetraploid) 1	1.633
	CNS0095611	Silvery flower (tetraploid) 2	1.448
	CNS0095612	Silvery flower (tetraploid) 3	1.077
	CNS0095613	Golden flower (tetraploid) 1	0.909
	CNS0095614	Golden flower (tetraploid) 2	1.431
	CNS0095615	Golden flower (tetraploid) 3	0.620
CRA001975	CRR073297	Stem 1	1.214
	CRR073298	Stem 2	0.816
	CRR073299	Stem 3	0.500
	CRR073300	Leaf 1	1.378
	CRR073301	Leaf 2	1.941
	CRR073302	Leaf 3	0.511
	CRR073303	Juvenile bud 1	0.636
	CRR073304	Juvenile bud 2	0.197
	CRR073305	Juvenile bud 3	0.684
	CRR073306	Third green 1	0.873
	CRR073307	Third green 2	0.630
	CRR073308	Third green 3	0.743
	CRR073309	Second white 1	0.214
	CRR073310	Second white 2	0.426
	CRR073311	Second white 3	0.236
	CRR073312	Silver flowering 1	0.116
	CRR073313	Silver flowering 2	0.019
	CRR073314	Silver flowering 3	0.473
	CRR073315	Gold flowering 1	0.763
	CRR073316	Gold flowering 2	1.443
	CRR073317	Gold flowering 3	0.895
	CRR073318	Tawny withering 1	10.169
	CRR073319	Tawny withering 2	8.854
	CRR073320	Tawny withering 3	10.143