Gene detail

Detail information of GWHGAAZE012340

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011071326.1	0	PREDICTED: pto-interacting protein 1 isoform X1 [Sesamum indicum]
Swissprot	tr\|Q41328\|PTI1_SOLLC	0	Pto-interacting protein 1
trEMBL	tr\|M1A0F1\|M1A0F1_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400011940}
TAIR10	AT3G62220.1	5E-156	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83986346	83997608	+
GWHAAZE00000003	mRNA	83986346	83997608	+
GWHAAZE00000003	exon	83986346	83986532	+
GWHAAZE00000003	exon	83987979	83988094	+
GWHAAZE00000003	exon	83988169	83988419	+
GWHAAZE00000003	exon	83989121	83989247	+
GWHAAZE00000003	exon	83989361	83989405	+
GWHAAZE00000003	exon	83990352	83990625	+
GWHAAZE00000003	exon	83991360	83991492	+
GWHAAZE00000003	exon	83997296	83997382	+
GWHAAZE00000003	exon	83997477	83997608	+
GWHAAZE00000003	five_prime_UTR	83986346	83986532	+
GWHAAZE00000003	five_prime_UTR	83987979	83988012	+
GWHAAZE00000003	CDS	83988013	83988094	+
GWHAAZE00000003	CDS	83988169	83988419	+
GWHAAZE00000003	CDS	83989121	83989247	+
GWHAAZE00000003	CDS	83989361	83989405	+
GWHAAZE00000003	CDS	83990352	83990625	+
GWHAAZE00000003	CDS	83991360	83991492	+
GWHAAZE00000003	CDS	83997296	83997382	+
GWHAAZE00000003	CDS	83997477	83997608	+

Transcript Sequence
>GWHTAAZE012354 AACTAGTAATCACTATTACTGTAGTCTCTTCCATTTGCATGCTCATCTACTCACCCTAGCCCACTTCAGACCCTTCCTTCAATGGTCACCAGAATGTAAACCCTGAGAGGCATATCTATGTAGTTACCTCATTTCCAACTGAAACCCCAAAACTACAAGCATCGGACTGATCATAGAACACACAAAGCTTGTCGAGCTTTTTCACTAAGAAAAAGGGAATCATGAGCTGCTTCAGCTGTTGTGTGGAAGATGATATACAAAAGGCTTCTGATAATGGACCGTTCATGGCAAATAACATGGCAGGTAACCATGCGGGTTATCAAGCCACAGAGGATGCACCAAAAGACACACAGACTGTAAATATCCAGCCTATAGCTGTCCCTGATATTCAGGTGGATGAGCTAAAAGAAATTACAGAAAATTTTGGTACAAAGGCTTTGATTGGCGAGGGCTCATATGGAAGGGTGTACCATGGTGTATTGAAAAGTGGCCAAGCGGCAGCAATAAAAAAGTTAGACTCCAGCAAGCAACCCGACCAAGAATTCTTAGCACAGGTTTCCATGGTGTCAAGGCTTAAACATGCAAATGTTGTCGAGCTACTTGGTTATTGTATGGATGGTGGTCTCCGTGTCCTTGCGTATGAGTATGCTTCAAATGGATCTCTTCATGACATTCTTCACGTAGATACCATGCTTCTGACTAAGCTCTTCTTTTTGCCTTTCACTGGGCGAAAAGGAGTGAAAGGTGCGCAGCCAGGTCCAGTACTGTCATGGTCCCAAAGGGTTAAAATTGCTGTTGGAGCGGCAAAAGGACTTGAATACTTGCATGAAAAGGCAGAGCCTCGTACTATACATCGTGATATCAAATCCAGCAATGTTTTACTTTTTGATGATGATGTAGCTAAGATTGCGGATTTTGATTTGTCCAATCAAGCCCCTGACAATGCAGCACGTCTTCATTCTACTCGTGTTCTTGGAACCTTTGGTTACCATGCTCCTGAGTATGCAATGACTGGACAGCTGAGCTCAAAGAGCGATGTTTACAGCTTTGGGGTGGTCCTTCTAGAACTATTGACCGGGCGTAAACCTGTTGATCATACACTGCCGCGTGGACAGCAGAGTCTGGTGACATGGGCAACACCAAAACTCAGTGAAGATAAGGTGAAGCAGTGCATTGACACGAGACTGAATAATGAATACCCTCCCAAGGCAGTTGCAAAGATGGCTGCTGTTGCTGCCTTGTGCGTGCAATACGAAGCTGATTTCAGGCCAAACATGAGCATTGTGGTTAAAGCACTCCAGCCACTGCTGAACACTCGATCCGGGCCCCCAGGGGAAGCTCCAAGCTTGTGA

Network for GWHGAAZE012340

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	72	359	1.80E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIII

KEGG pathway

KO	Enzyme	pathway	mapID
K13436	PTI1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	101.866
	SRR3591706	second leaf	37.483
	SRR3591707	mature leaf	33.560
	SRR3591708	Shoot apex	88.703
	SRR3591709	Stem	75.096
	SRR3591710	White floral bud	43.394
	SRR3591711	White flower	43.500
	SRR3591712	Green floral bud	74.946
	SRR3591713	Yellow flower	27.258
SRP173429	SRR8316895	Juvenile bud stage	45.004
	SRR8316896	Juvenile bud stage	51.583
	SRR8316897	Juvenile bud stage	24.127
	SRR8316894	Third green stage	22.896
	SRR8316900	Third green stage	76.864
	SRR8316901	Third green stage	74.377
	SRR8316898	Complete white stage	24.504
	SRR8316899	Complete white stage	106.045
	SRR8316903	Complete white stage	43.140
	SRR8316902	Silver flowering stage	9.421
	SRR8316904	Silver flowering stage	12.802
	SRR8316905	Silver flowering stage	6.638
	SRR8316906	Gold flowering stage	21.661
	SRR8316907	Gold flowering stage	24.711
	SRR8316908	Gold flowering stage	20.857
SRP132670	SRR6706286	Control	83.262
	SRR6706287	Light intensity 50%	89.913
	SRR6706288	Light intensity 20%	96.158
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.477
	CNS0095593	Slightly white alabastrum(diploid) 2	54.612
	CNS0095594	Slightly white alabastrum(diploid) 3	40.743
	CNS0095595	Whole white alabastrum(diploid) 2	46.430
	CNS0095596	Whole white alabastrum(diploid) 3	48.594
	CNS0095597	Whole white alabastrum(diploid) 4	45.273
	CNS0095598	Silvery flower (diploied) 1	49.811
	CNS0095599	Silvery flower (diploied) 2	39.283
	CNS0095600	Silvery flower (diploied) 3	41.415
	CNS0095601	Golden flower (diploid) 1	41.594
	CNS0095602	Golden flower (diploid) 2	41.180
	CNS0095603	Golden flower (diploid) 3	37.879
	CNS0095604	Slightly white alabastrum(tetraploid) 1	56.416
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.414
	CNS0095606	Slightly white alabastrum(tetraploid) 3	103.425
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.130
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.220
	CNS0095609	Whole white alabastrum(tetraploid) 3	66.698
	CNS0095610	Silvery flower (tetraploid) 1	32.618
	CNS0095611	Silvery flower (tetraploid) 2	39.589
	CNS0095612	Silvery flower (tetraploid) 3	23.658
	CNS0095613	Golden flower (tetraploid) 1	14.210
	CNS0095614	Golden flower (tetraploid) 2	22.414
	CNS0095615	Golden flower (tetraploid) 3	9.266
CRA001975	CRR073297	Stem 1	86.804
	CRR073298	Stem 2	88.984
	CRR073299	Stem 3	92.548
	CRR073300	Leaf 1	107.929
	CRR073301	Leaf 2	105.578
	CRR073302	Leaf 3	110.970
	CRR073303	Juvenile bud 1	124.403
	CRR073304	Juvenile bud 2	91.651
	CRR073305	Juvenile bud 3	131.884
	CRR073306	Third green 1	12.424
	CRR073307	Third green 2	14.079
	CRR073308	Third green 3	14.081
	CRR073309	Second white 1	15.419
	CRR073310	Second white 2	10.583
	CRR073311	Second white 3	7.211
	CRR073312	Silver flowering 1	4.552
	CRR073313	Silver flowering 2	6.367
	CRR073314	Silver flowering 3	7.137
	CRR073315	Gold flowering 1	44.113
	CRR073316	Gold flowering 2	48.615
	CRR073317	Gold flowering 3	47.699
	CRR073318	Tawny withering 1	111.418
	CRR073319	Tawny withering 2	95.510
	CRR073320	Tawny withering 3	111.410