Gene detail

Detail information of GWHGAAZE012339

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011089078.1	PREDICTED: cell division control protein 45 homolog [Sesamum indicum]
trEMBL	tr\|A0A068U8F9\|A0A068U8F9_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03898.1}
TAIR10	AT3G25100.1	cell division cycle 45

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83974531	83977843	+
GWHAAZE00000003	mRNA	83974531	83977843	+
GWHAAZE00000003	exon	83974531	83976296	+
GWHAAZE00000003	exon	83977210	83977300	+
GWHAAZE00000003	exon	83977400	83977620	+
GWHAAZE00000003	exon	83977699	83977843	+
GWHAAZE00000003	CDS	83974531	83976296	+
GWHAAZE00000003	CDS	83977210	83977300	+
GWHAAZE00000003	CDS	83977400	83977620	+
GWHAAZE00000003	CDS	83977699	83977843	+

Transcript Sequence
>GWHTAAZE012353 ATGGTGAGAGAGCAAAGTATTGAGTCATTTTATGCTCGATTACGCGAATCGGCTTTAGCTTCAGCTTCTTCCACTCCTTTACTCATATTCCCCTCAACCTCTGATGCTGATTCCCTTTGTGCATTGAAGATTATAGGCCATGTTCTTGAGTCTGATTCGGTTAGGTATGCGTGTTACCCTGTTTCAACATTCAAGGAAATTCACAAGTATGCTGGCCCTAGTTTGTGTTCCTCAACTGATGAGCCCATCACGATTCTTCTTATCAATTGGGGGTGTCACCGGGATCTTCGGAAGGTTCTTGAAATAGGATCGGTGGCTCGTGTTTTCGTAGTGGACAGTCATAGGCCGATTCACTTACATAATCTCAGTGATCAGAATGATCGTGTGGTTGTGCTTTATACGATGGATGATGAGAACCAGGCTGATTTGGCATATGATTTTGATGTTTCGGCGTTGGCAAGTGCTAGTGATTTGCACAGTGATGATGAGGTTGAAGATTTATCCGATAGCGAAGATGAGAATGAGAGTGAAGTGGAAGAGGATGAAGAAGGAGGGGCTCAAAAAAGGAGGAGAGTTTCACAAGAAAATGAGACCGACCCGGTTAAGCTTTTTAGGAAGTTGAAGAAAGAGTACTATTACATGGGTACTTTCCATGGGAAGCCATCTGGGTGTTTGATGTATGAATTGTCTCATTTGCTGAGGAAGAACACGAACGAGTTACTCTGGTTGGCTTGTGTGTCTTTGACCGATCAGTTTGTTCACGAGAGACTAACAAATGAGAGATACCAAGCCGGGGTAATGGAGCTTGAGCAGCACATTAATAGCTCAGGTAATTTGGATGCTATAACTTCAGTGACTCTAAAGGATGGAACAAAGGTCTCTGCACCCGATTCTTCAAGAATTGCGTATGAAGATGAGCCAAGGCTAATGTTGTTACAGGAGTGGAACTTGTTTGATTCAATGTTGTGCTCGTCCTACATGGCAACTAAATTGAAGACTTGGAGTGATAACGGGATGAAAAAGCTCATGCTACTTCTTGCGCAAATGGGATTTGCACTGGACGAGTGCAAACAGAAGTTCCAATACATGAGCGTTGAGATCAAGCGCAAAATGAAGGATATGTTTGAGCATTTTTTGCCAGAATACGGGCTTACCGATTTCTATTACCGAGGTTTCTTGCTACTACATGGGTACAGTTCCAAAGTTTCTGCCGCAGATGTGGTGTATGGAGTTACAGCATTGCTGGAGTCATCAGTAGAATTGGATGGTTCTTGTGCTTCTAAACAGTTTGGTGTGGCTTATGATGCATTATCTTTGAGTAAGCTAGAAAAGCTGGAGAATGGAATGCAACATGCTATCAAAATCCAAAGGGCGATCCTTAGACAAGGAAGTGCGGCAATAATCAGAAAGGGTTCTATAAGAAGTGGGGGTAAATTCAGGTGGGTAAAGCTTGAAGATTCAGCAGATGCAAAGTTGTTGGGTTACCCACAGGCTTTAACGAAATTTGGGTATTTTTTGATGGATGCTTTGAGGGAGAAGGGGGCGAAAATGAAGCCTTTGATCTGCGTTTGCTACACTCAAGAACGAGACAAGGTGTTGATTGTGGGAGTTTGTGGGAAACCGCGGCTTGGGGCAATTCAAGGAAATGCATTTGGGATTGCTTTTAGAAATGCTGCTGAGGAGACTGGAGCTGAGTTTTTTCATGAGCTTTTTGAATCTTCGTGGATAGTTTTGGATGCAGTTGCTGTAAACTCATTCATGATCAGTTTTCAGCTTCCTGGTTTTCGTATGCCACCTATGGTGAAGGATGATGGAGAAGATATTGGAAGTGATTCTGATGGAGGGAATTTCGAGGCTGATGTGGCGCCGCCTTGTGAAGCTGAAATGAGATCCACTGGTAATGTTGCTGCATTCAATAATTCTTTAGAGACCTCACTTCAGCAGCAGCAGCATTTTCAACCGCCCTTTGCTCCTTCACTGCCCAAGGATGTGCCACCCTTATCCCCTCCTCTCCCAACTTCTCCACCTCCCCCACGTCCTCCTCCTCCATCAGCATTATCTGATCCCATTATCAACAAAAAAAAATGCTGGGCTTTCCCTCCGCCTATGAATCACGGAGAACCCATACCTCATATATCCCCTTCTAAAGACCCAATTCCTGTGGCAGTTAGAGGTTTTATTCTTTCATCTGCATTTCCCATGGAGAATATAGAAAGCTATTGA

Network for GWHGAAZE012339

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02724.15	CDC45	28	418	3.30E-106
PF02724.15	CDC45	425	590	1.40E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06628	CDC45	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006270	biological_process	DNA replication initiation

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.204
	SRR3591706	second leaf	0.719
	SRR3591707	mature leaf	0.357
	SRR3591708	Shoot apex	6.951
	SRR3591709	Stem	1.043
	SRR3591710	White floral bud	0.039
	SRR3591711	White flower	0.117
	SRR3591712	Green floral bud	0.625
	SRR3591713	Yellow flower	0.004
SRP173429	SRR8316895	Juvenile bud stage	1.067
	SRR8316896	Juvenile bud stage	1.187
	SRR8316897	Juvenile bud stage	0.429
	SRR8316894	Third green stage	0.492
	SRR8316900	Third green stage	0.557
	SRR8316901	Third green stage	0.242
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.306
	SRR8316903	Complete white stage	0.032
	SRR8316902	Silver flowering stage	0.032
	SRR8316904	Silver flowering stage	0.146
	SRR8316905	Silver flowering stage	0.017
	SRR8316906	Gold flowering stage	0.033
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.236
	SRR6706287	Light intensity 50%	0.382
	SRR6706288	Light intensity 20%	0.468
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.846
	CNS0095593	Slightly white alabastrum(diploid) 2	0.774
	CNS0095594	Slightly white alabastrum(diploid) 3	0.936
	CNS0095595	Whole white alabastrum(diploid) 2	0.365
	CNS0095596	Whole white alabastrum(diploid) 3	0.175
	CNS0095597	Whole white alabastrum(diploid) 4	0.095
	CNS0095598	Silvery flower (diploied) 1	0.803
	CNS0095599	Silvery flower (diploied) 2	0.323
	CNS0095600	Silvery flower (diploied) 3	0.355
	CNS0095601	Golden flower (diploid) 1	0.188
	CNS0095602	Golden flower (diploid) 2	0.124
	CNS0095603	Golden flower (diploid) 3	0.127
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.727
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.768
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.024
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.425
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.175
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.274
	CNS0095610	Silvery flower (tetraploid) 1	0.042
	CNS0095611	Silvery flower (tetraploid) 2	0.171
	CNS0095612	Silvery flower (tetraploid) 3	0.207
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.002
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.368
	CRR073298	Stem 2	1.847
	CRR073299	Stem 3	2.669
	CRR073300	Leaf 1	0.105
	CRR073301	Leaf 2	0.349
	CRR073302	Leaf 3	0.307
	CRR073303	Juvenile bud 1	0.212
	CRR073304	Juvenile bud 2	0.129
	CRR073305	Juvenile bud 3	0.163
	CRR073306	Third green 1	0.038
	CRR073307	Third green 2	0.039
	CRR073308	Third green 3	0.053
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.005
	CRR073311	Second white 3	0.004
	CRR073312	Silver flowering 1	0.002
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.274
	CRR073316	Gold flowering 2	0.192
	CRR073317	Gold flowering 3	0.189
	CRR073318	Tawny withering 1	2.417
	CRR073319	Tawny withering 2	0.918
	CRR073320	Tawny withering 3	3.138