Gene detail

Detail information of GWHGAAZE012338

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010649665.1	0	PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Vitis vinifera]
Swissprot	tr\|Q9FPT1\|UBP12_ARATH	1E-18	Ubiquitin carboxyl-terminal hydrolase 12
trEMBL	tr\|F6HE30\|F6HE30_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50282.1}
TAIR10	AT5G18525.1	0	protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83954228	83969750	-
GWHAAZE00000003	mRNA	83954228	83969750	-
GWHAAZE00000003	exon	83969625	83969750	-
GWHAAZE00000003	exon	83969161	83969246	-
GWHAAZE00000003	exon	83965889	83968039	-
GWHAAZE00000003	exon	83965105	83965432	-
GWHAAZE00000003	exon	83964801	83965016	-
GWHAAZE00000003	exon	83964634	83964706	-
GWHAAZE00000003	exon	83964336	83964541	-
GWHAAZE00000003	exon	83964179	83964241	-
GWHAAZE00000003	exon	83963702	83963910	-
GWHAAZE00000003	exon	83963466	83963577	-
GWHAAZE00000003	exon	83962606	83963115	-
GWHAAZE00000003	exon	83960587	83960897	-
GWHAAZE00000003	exon	83960049	83960292	-
GWHAAZE00000003	exon	83959684	83959757	-
GWHAAZE00000003	exon	83959509	83959561	-
GWHAAZE00000003	exon	83956438	83956567	-
GWHAAZE00000003	exon	83955603	83955775	-
GWHAAZE00000003	exon	83955209	83955481	-
GWHAAZE00000003	exon	83954553	83954645	-
GWHAAZE00000003	exon	83954228	83954385	-
GWHAAZE00000003	CDS	83969625	83969750	-
GWHAAZE00000003	CDS	83969161	83969246	-
GWHAAZE00000003	CDS	83965889	83968039	-
GWHAAZE00000003	CDS	83965105	83965432	-
GWHAAZE00000003	CDS	83964801	83965016	-
GWHAAZE00000003	CDS	83964634	83964706	-
GWHAAZE00000003	CDS	83964336	83964541	-
GWHAAZE00000003	CDS	83964179	83964241	-
GWHAAZE00000003	CDS	83963702	83963910	-
GWHAAZE00000003	CDS	83963466	83963577	-
GWHAAZE00000003	CDS	83962606	83963115	-
GWHAAZE00000003	CDS	83960587	83960897	-
GWHAAZE00000003	CDS	83960049	83960292	-
GWHAAZE00000003	CDS	83959684	83959757	-
GWHAAZE00000003	CDS	83959509	83959561	-
GWHAAZE00000003	CDS	83956438	83956567	-
GWHAAZE00000003	CDS	83955603	83955775	-
GWHAAZE00000003	CDS	83955209	83955481	-
GWHAAZE00000003	CDS	83954553	83954645	-
GWHAAZE00000003	CDS	83954228	83954385	-

Transcript Sequence
>GWHTAAZE012352 ATGGAAGATCAGCTGTGTTTCGATTGTCTTCAACGTCGAATTCGCACCGATTTCTCAGACAAACTCGTTTTCTCTTATGGCATCTCCGATTCTCCCCTCCCCTTCGGCTCCACCGCCGTTGTTCAGATGTCTAAATCTAGTGGAGGAACTTCGCAGTTGTTTGTATTGGTATATATGCCGAGCAGGGGAGACGATTGCCTTACCAAATATGTCGATGAGTATTGTCTGCCAGATCTTGAAAGGAATCATGAAAGTAGGAACAATAACGAACCTTTATCAGAAGTAAATCAAGATCAAGCAGAGGTCAGTATTGGAAATCATAATGATAAATCTACTTCATTAGAAACTAAATCAAATGAATCTCAGTGTTTGTCCAATGGTGGCAGACAAGCATGTTTATCTGGATTAGGGTGCAAAAGTTCAACCTGTAAATATTCTGGTAGGTTTTCTTGCTCAAGGAGTATCACTGCCTTGGCTCCAGTATCTCGGATTGGCATTTCTTCTTATTCTGTACTTGAAGAGCTTGCTTCAGACTTCTTATGTGGGTCCATGGAAGATCACATTTTGTCCTCACTGAGTCTCCTAATAGAAGGAAAAGCAACGGGGCGAGATAGCTTAAACTTTCTTAGTTTAGTTGGGATACCATCATTTGATGAGAATGGATTCCCTAGCTGCGTAAGGCATCCAAATATAATGCCCATTCTGGGGATGCTAAAATCATCTAGCCATATTAATTTAGTGCTGCCAAAAGCTCCATATACCTTGAATAATATTCTTCACTATAGCCCCAACTCCTTAAAGTTGGACTGGCATATAAGATTTTTAATCTACCAGCTATTGTCTGCCTTAGCCCACATGCATGGTTTAGGGATTGCCCATGGTAATGTGTGCCCATCCAATGTATTGTTGACTGATTTGTGCTGGTGTTGGCTGAACCATGGTGATAAACTACATCTGCGCTCTAAATTAAATTCAAGAAGTAAAGAAGGCTCTGGTATTACCTCTTTAAGGATAGGTTGCTGCATTGAGGGCTGTCATTCTCAGGGACTTTATGCTGATTTGAAGTTATCTCAATCTATTGACTGGCATTCTGGTTTTAGTCAATGGTGGAGGGGAGAGTTGAGTAATTTCGAGTATCTTCTCGTCTTAAACAGACTAGCTGGGAGAAGGTGGGGTGACCACACATTTTACACGGTTATGCCTTGGGTTATTGATTTTAGTGTAAAGCCCGATGAGAATAACAATGCGGGGTGGAGAGATTTAACCAAAAGCAAGTGGCGCTTGGCAAAAGGCGATGAACAGTTGGATTTCACGTATTCGACATCTGAAATCCCACATCATGTATCAGATGAATGCCTCTCTGAATTGGCTGCCTGCAGTTACAAAGCAAGGAGGTTACCTTTGAGTGTTTTGCGCTTGGCTGTTCGTTCGGTATATGAACCAAATGAGTATCCTTCCACAATGCAAAGACTTTACCAGTGGACCCCTGATGAGTGCATTCCGGATTTCTATTGTGACCCCGAAATATTTTACTCTCTTCATTCTGGTATGTCTGATTTGGCAGTACCTTCATGGGCAGGCATTACTGAGGAGTTCATTAAATTACATAGAGATGCTTTAGAGAGTGACCGGGTTTCTTCCCAAATTCATCATTGGATTGACATCACTTTTGGGTACAAAATGTCTGGTGAGGCTGCTGTTGGTGCCAAAAATGTCATGTTGCCCCCTTCAGCATCAACAATGCCAAGGTCAGTGGGCCGCCGTCAGCTCTTTACCCAACCACATCCTGCTCGTCGAGGTTGTACCAGGAGAATTCATAGAAGTACAACCGAGTTAACTATGCATCCATGCCAAGTGAATAAAGTCGAGGTTGAGAAACCTCTCCTTCTTGAAGCTGCTCATTTGCAGGAATTGGAAGAAGCAGCTGCATTTCGTGAACATGCTTGGAATTTGAGTCCTGTCTATTCTGGTCACCTAAAAGATTGGGCCAGGGAAAACCCTTCTGTAGAAGCATCTAGATCAGCTGAATCTGGCCTTGCAAGCAACTCTTGGGTTCATTCAGTTATTGATTTAAATTATCTTCTTGAGCATATCGAGGTGGATGCTGACAGTTCTGTGGGATATCAAGAGCTGTTGCTATGGAGGCAGAAAACAACCGATTCCAAGATTTTTTCTGAAGATGTTGCGAATGATTTATTTTCGGTTGGGTGCATTTTAGCGGAACTTCATTTGAGAAGGCCACTTTTTGATCCAACTTCATTAGCTGTTTATTTAGAGAGTGGTGTCTTACCTAGATTGATGCAGGAACTCCCACCTCATGCCGAAGTGTTTGTTGAAGCATGCATCCAGAAGGATTGGAGGAGGAGGCCTTCTGCCAAGTGTCTTTTGGAATCTCCGTACTTCCCAACAACAATCACCTCATCATACTTGTTTCTAGCGCCGCTTCAACTTTTATCAAAGGAGGGGACCCGTCTACGCTATGCTGCTAGTTTTGCAAATAGAGGAGCCTTGAAAGCAATGGGAGCATTTGCAGCTGAAATGTGTGCACCCCATTGCTTACCACTTGTAATCACATCTTTGTCTGATGATGAAGCCGAATGGGCTTATATACTACTGAAAGAATTCTTAAAGTGCCTTAAACCGAAAGCAGTAAAGGCACTCATCTTGCCTGCTATCCAGAAGATTCTCCAGGCTACAGGTTATTCCCATTTGAAGGTTTCTCTTCTCCAAGGTTCATTTGTGCAGGAGGTATGGAACAGGATTGGTAAACAAGCATATCTGGAGAAAATACATCCTGTGGTTCTATCGAATTTGTATGTTGCTCCCCATAAGAGTTCAGCTGCTGCCGCCTCTGTGCTGCTGATTGGCTCCAGTGAAGAGCTTGGCATACCAATTACAGTTCATCAGACGATCTTCCCATTGATTCACTGTTTTGGGAAAGGGCTCTGCAATGATGGAATCGATGTCGTGGTTAGAATTGGTGGTCTTTTTGGAGAGAATTTTGTTGTGAAACAGATTCTTCCATTACTAAGAAACGTTTTTCACTCTTGTGTTGATGCTTCATATGTGAATAAGCCTGAACCCATGCAGAATTGGAGTGCATTAGCCCTTATGGACTGTCTAAAAACATTAGATGGCCTCGTTGCAGTTTTGTCGAGGGAGGTGGTTGTAAAGGAGTTGATTGAAGACGGAAGTTGCCTATACATTCAGGTTCTCATGCAGATCAATACGGGAATTCCAGTGCTTCAGTTTGCTGCTACAAGTCTTATTGCAATTTGTCAGCTAATTGGACCAGATTTAACGACATTGCATGTCCTTCCAAAACTCAAAGGGCTATTCGATGAGTTTGCTTTCTCCCAGGAAACTCCCATTGGTTCTGGTTCTCTGCGTGGAACCCTTGATGCTTCCAAACCAAAAGTAGACGATGAGGATCAAATCGAAAGCCGTATGGACCTTGTGTTGCTCCTATATCCTTCTTTGGCATCTCTTCTCGGTATAGAAAAGCTCCGCCAGTGTTGTGCCACATGGTTGCTTCTTGAGCAGTTTCTTCTACGGCATTATAACTGGAAGTGGGAATACTCAGGGGAATCATCTCGTGGTGGTCCAGAGAGACGCATTTTCAGCAAGAGCTCAACATCTGAATACAATCCTGCTAAGCTGTTGCTTAATGGGTTTGGGTGGTCTATTCCACAACAATCACAGGGAATTAGAGGTGGCAAAAACCTGGTGCCTCGTAAACCGTTTTATGACAATCATCAGAACCAAGTTGAGAGGCATTTGACTTCCTCAAGCTATGGAAATCGTGAACCCTGGTACTGGTTCCCTAGTCCAGCTTCTAGCTGGGATGGGATCGATTTTCTAGGTCGGGTTGGGGGTCCAAAGGACGAACTTCCGTGGAAGATCAGAGCATCTGTGATGCACTCTGTCCGTGCTCATCATGGGGCAGTAAGGTCTTTTTCTGTACGCCAAGATGAGTGTACATTTTTTACAGCTGGAGTCGGTCCGGGATTCAAGGGAACTGTGCAGAAGTGGGATTTATCTGCTGTTAATGCTTTATCTGGTTATCACGGCCATGAGGAGGTTGTTAATGACATCTGTGTCCTACCATCCCCTGAAAGGGTTGCTTCATGTGATGGAACAGTACATGTTTGGAATAGTGAAACTGGGAAACTAATATCTGTATTTGCTGAATTTTCTGCAAATTCTGCACATCAAGGAAATCCTTTAACCTCTGCATCAAGAATAAATTCTGACCAAGCCAATATGCTCAATGTCAATCCCCTATCTAGTGGAATATTGACTACTGCATTTGATGGGAGTTTGTACACTAGTATGCATCACTTGGAAAATATTGATATGCTCGTAGTGGGTACAGGAAATGGATCTCTCAGATTCATCGACGTCAATCAAGGTCAAAAACTTCATCTGTGGAGAAGTGAATCAGTTGAATCCAATTTCCCGTGTATGATCTCTTCCATATGCTCGTGCGGTTCTGACATTATGCAAGCTGGTGGAGCTGCTGGTTCTCCATCTTGGATAGCAGCGGGACTAAGTTCCGGCATTTGCAGATTGCTTGATGTGAGGAGTGGAAATATTATTGCCTCATGGCAGGCTCATGATGGATATGTGACGAAGTTAGCTGCACCAGAGGACCATTTGCTCATCTCCAGCTCTCTTGACAGGACCTTACGTATTTGGGACTTGAGAAGGAGTTGGCCACCAGAACCAATTGTTTTTAGAGGTCACAATGATAGTGTATCAGGAATTTCAAGATCCATATCGGAGACACCACCAACTCACTACACATTCAAAATCCAATTATTTTCACTACTGGCCAAGAACAAAGTAGACAGATACGAGTCTAGCAGTTTCGAAGCTGGAGGATACAAATGGAAGTTGGTACTCCACCCCAATGGCAACGAGAACAAAAATGTAAAAGAACATGTCTCCATCTACTTGGCCATGGCTGAAGGAGCAACTTCACTCCCACCTGGTTGGGAGGTCTATGCGACTTTCCGTATGTTTCTACTTGATCAGAACAAGGACAACTACTTGACACTCGAAGATTCCTCTGGAAAGGGAAAGCGCTTCCATGGGATGAAGCTAGAATGGGGTTTCGACCGGTTCATCCCCCTCAAAGTATTTGGTGATGCCACCAATGGATATCTTGTTGATGACTGTTGCGTAGTTGGAGCAGAGGTTTTTGTCTGCAAAGAAAGAACCAAAGGGAAAGTAGAGTGTTTAACGATGATAAAAGACGCCATTACTTACAAGCACAGCTGGAAAATTGAGAAATATTCTGACTCAGATGCAGTGTGTTACAAGGAATTCTATGCTGATCCTTCATCCCTCCCTCCTGCTTCTAAAATATTTGCAGAATTCACACTGCGTATACTTGACCAAATGAATGTCAAGCATCACTTTGGTAAAGCCAGTTACTGGTTCAGTGGCTCAAGTGAGGAATGTGGTTGGGCAAGGTTCATTTTGCTGAGTCAGTTACAGGGCCAAAAGACAGGGTTTTTGATCAAGGACAGTTGTTTCATAGAAGCAGAGGTCACCATACTTGGGCTGAGTAATGTTCTGATATAA

Network for GWHGAAZE012338

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	223	304	3.50E-08
PF02138.19	Beach	368	579	1.30E-42
PF00400.33	WD40	1354	1385	0.0093
PF00400.33	WD40	1531	1567	0.013
PF00917.27	MATH	1609	1736	7.00E-12
PF00917.27	MATH	1761	1854	0.00032

Protein Sequence

>GWHPAAZE012345
MEDQLCFDCLQRRIRTDFSDKLVFSYGISDSPLPFGSTAVVQMSKSSGGTSQLFVLVYMPSRGDDCLTKYVDEYCLPDLERNHESRNNNEPLSEVNQDQAEVSIGNHNDKSTSLETKSNESQCLSNGGRQACLSGLGCKSSTCKYSGRFSCSRSITALAPVSRIGISSYSVLEELASDFLCGSMEDHILSSLSLLIEGKATGRDSLNFLSLVGIPSFDENGFPSCVRHPNIMPILGMLKSSSHINLVLPKAPYTLNNILHYSPNSLKLDWHIRFLIYQLLSALAHMHGLGIAHGNVCPSNVLLTDLCWCWLNHGDKLHLRSKLNSRSKEGSGITSLRIGCCIEGCHSQGLYADLKLSQSIDWHSGFSQWWRGELSNFEYLLVLNRLAGRRWGDHTFYTVMPWVIDFSVKPDENNNAGWRDLTKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAACSYKARRLPLSVLRLAVRSVYEPNEYPSTMQRLYQWTPDECIPDFYCDPEIFYSLHSGMSDLAVPSWAGITEEFIKLHRDALESDRVSSQIHHWIDITFGYKMSGEAAVGAKNVMLPPSASTMPRSVGRRQLFTQPHPARRGCTRRIHRSTTELTMHPCQVNKVEVEKPLLLEAAHLQELEEAAAFREHAWNLSPVYSGHLKDWARENPSVEASRSAESGLASNSWVHSVIDLNYLLEHIEVDADSSVGYQELLLWRQKTTDSKIFSEDVANDLFSVGCILAELHLRRPLFDPTSLAVYLESGVLPRLMQELPPHAEVFVEACIQKDWRRRPSAKCLLESPYFPTTITSSYLFLAPLQLLSKEGTRLRYAASFANRGALKAMGAFAAEMCAPHCLPLVITSLSDDEAEWAYILLKEFLKCLKPKAVKALILPAIQKILQATGYSHLKVSLLQGSFVQEVWNRIGKQAYLEKIHPVVLSNLYVAPHKSSAAAASVLLIGSSEELGIPITVHQTIFPLIHCFGKGLCNDGIDVVVRIGGLFGENFVVKQILPLLRNVFHSCVDASYVNKPEPMQNWSALALMDCLKTLDGLVAVLSREVVVKELIEDGSCLYIQVLMQINTGIPVLQFAATSLIAICQLIGPDLTTLHVLPKLKGLFDEFAFSQETPIGSGSLRGTLDASKPKVDDEDQIESRMDLVLLLYPSLASLLGIEKLRQCCATWLLLEQFLLRHYNWKWEYSGESSRGGPERRIFSKSSTSEYNPAKLLLNGFGWSIPQQSQGIRGGKNLVPRKPFYDNHQNQVERHLTSSSYGNREPWYWFPSPASSWDGIDFLGRVGGPKDELPWKIRASVMHSVRAHHGAVRSFSVRQDECTFFTAGVGPGFKGTVQKWDLSAVNALSGYHGHEEVVNDICVLPSPERVASCDGTVHVWNSETGKLISVFAEFSANSAHQGNPLTSASRINSDQANMLNVNPLSSGILTTAFDGSLYTSMHHLENIDMLVVGTGNGSLRFIDVNQGQKLHLWRSESVESNFPCMISSICSCGSDIMQAGGAAGSPSWIAAGLSSGICRLLDVRSGNIIASWQAHDGYVTKLAAPEDHLLISSSLDRTLRIWDLRRSWPPEPIVFRGHNDSVSGISRSISETPPTHYTFKIQLFSLLAKNKVDRYESSSFEAGGYKWKLVLHPNGNENKNVKEHVSIYLAMAEGATSLPPGWEVYATFRMFLLDQNKDNYLTLEDSSGKGKRFHGMKLEWGFDRFIPLKVFGDATNGYLVDDCCVVGAEVFVCKERTKGKVECLTMIKDAITYKHSWKIEKYSDSDAVCYKEFYADPSSLPPASKIFAEFTLRILDQMNVKHHFGKASYWFSGSSEECGWARFILLSQLQGQKTGFLIKDSCFIEAEVTILGLSNVLI

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDKL-Cr
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.750
	SRR3591706	second leaf	3.216
	SRR3591707	mature leaf	3.183
	SRR3591708	Shoot apex	4.199
	SRR3591709	Stem	7.252
	SRR3591710	White floral bud	6.529
	SRR3591711	White flower	6.312
	SRR3591712	Green floral bud	6.110
	SRR3591713	Yellow flower	5.263
SRP173429	SRR8316895	Juvenile bud stage	3.466
	SRR8316896	Juvenile bud stage	4.615
	SRR8316897	Juvenile bud stage	2.497
	SRR8316894	Third green stage	2.413
	SRR8316900	Third green stage	5.840
	SRR8316901	Third green stage	6.186
	SRR8316898	Complete white stage	1.347
	SRR8316899	Complete white stage	5.282
	SRR8316903	Complete white stage	3.439
	SRR8316902	Silver flowering stage	1.557
	SRR8316904	Silver flowering stage	3.166
	SRR8316905	Silver flowering stage	1.284
	SRR8316906	Gold flowering stage	3.951
	SRR8316907	Gold flowering stage	3.610
	SRR8316908	Gold flowering stage	3.304
SRP132670	SRR6706286	Control	4.264
	SRR6706287	Light intensity 50%	4.539
	SRR6706288	Light intensity 20%	5.117
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.812
	CNS0095593	Slightly white alabastrum(diploid) 2	3.325
	CNS0095594	Slightly white alabastrum(diploid) 3	2.694
	CNS0095595	Whole white alabastrum(diploid) 2	2.401
	CNS0095596	Whole white alabastrum(diploid) 3	2.506
	CNS0095597	Whole white alabastrum(diploid) 4	1.640
	CNS0095598	Silvery flower (diploied) 1	2.901
	CNS0095599	Silvery flower (diploied) 2	1.829
	CNS0095600	Silvery flower (diploied) 3	4.594
	CNS0095601	Golden flower (diploid) 1	2.301
	CNS0095602	Golden flower (diploid) 2	4.899
	CNS0095603	Golden flower (diploid) 3	4.628
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.075
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.045
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.017
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.460
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.002
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.786
	CNS0095610	Silvery flower (tetraploid) 1	5.884
	CNS0095611	Silvery flower (tetraploid) 2	6.865
	CNS0095612	Silvery flower (tetraploid) 3	5.121
	CNS0095613	Golden flower (tetraploid) 1	2.300
	CNS0095614	Golden flower (tetraploid) 2	4.441
	CNS0095615	Golden flower (tetraploid) 3	5.743
CRA001975	CRR073297	Stem 1	5.427
	CRR073298	Stem 2	4.721
	CRR073299	Stem 3	3.586
	CRR073300	Leaf 1	5.762
	CRR073301	Leaf 2	5.505
	CRR073302	Leaf 3	3.985
	CRR073303	Juvenile bud 1	3.481
	CRR073304	Juvenile bud 2	2.224
	CRR073305	Juvenile bud 3	4.592
	CRR073306	Third green 1	1.110
	CRR073307	Third green 2	0.627
	CRR073308	Third green 3	1.658
	CRR073309	Second white 1	0.821
	CRR073310	Second white 2	1.665
	CRR073311	Second white 3	2.303
	CRR073312	Silver flowering 1	1.809
	CRR073313	Silver flowering 2	1.642
	CRR073314	Silver flowering 3	1.026
	CRR073315	Gold flowering 1	1.802
	CRR073316	Gold flowering 2	3.570
	CRR073317	Gold flowering 3	1.617
	CRR073318	Tawny withering 1	4.625
	CRR073319	Tawny withering 2	2.938
	CRR073320	Tawny withering 3	3.164