Detail information of GWHGAAZE012336


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002280106.10PREDICTED: S-adenosylmethionine synthase 5 [Vitis vinifera]
Swissprottr|A7Q0V4|METK5_VITVI0S-adenosylmethionine synthase 5
trEMBLtr|F6HZE2|F6HZE2_VITVI0S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}
TAIR10AT1G02500.26E-132S-adenosylmethionine synthetase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8393215783932921-
GWHAAZE00000003mRNA8393215783932921-
GWHAAZE00000003exon8393215783932921-
GWHAAZE00000003CDS8393215783932921-
Transcript Sequence

Network for GWHGAAZE012336

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02772.17S-AdoMet_synt_M11011.60E-32
PF02773.17S-AdoMet_synt_C1032443.40E-62
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00789metK Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0006556biological_processS-adenosylmethionine biosynthetic process
GO:0004478molecular_functionmethionine adenosyltransferase activity
GO:0005524molecular_functionATP binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE012336.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30250500750100012501500175020002250250027503000325035…3500Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf880.460
SRR3591706second leaf581.331
SRR3591707mature leaf142.237
SRR3591708Shoot apex394.347
SRR3591709Stem3200.448
SRR3591710White floral bud318.679
SRR3591711White flower271.107
SRR3591712Green floral bud341.924
SRR3591713Yellow flower248.692
SRP173429 SRR8316895Juvenile bud stage 358.712
SRR8316896Juvenile bud stage 299.735
SRR8316897Juvenile bud stage 144.717
SRR8316894Third green stage 101.248
SRR8316900Third green stage 351.750
SRR8316901Third green stage 357.500
SRR8316898Complete white stage 167.577
SRR8316899Complete white stage 510.077
SRR8316903Complete white stage 214.144
SRR8316902Silver flowering stage167.945
SRR8316904Silver flowering stage217.743
SRR8316905Silver flowering stage132.624
SRR8316906Gold flowering stage 333.024
SRR8316907Gold flowering stage 352.668
SRR8316908Gold flowering stage 652.831
SRP132670SRR6706286Control309.289
SRR6706287Light intensity 50%343.532
SRR6706288Light intensity 20%389.025
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1400.022
CNS0095593Slightly white alabastrum(diploid) 2570.030
CNS0095594Slightly white alabastrum(diploid) 3440.922
CNS0095595Whole white alabastrum(diploid) 2447.603
CNS0095596Whole white alabastrum(diploid) 3251.742
CNS0095597Whole white alabastrum(diploid) 4318.898
CNS0095598Silvery flower (diploied) 1306.746
CNS0095599Silvery flower (diploied) 2359.114
CNS0095600Silvery flower (diploied) 3318.689
CNS0095601Golden flower (diploid) 1224.681
CNS0095602Golden flower (diploid) 2230.470
CNS0095603Golden flower (diploid) 3227.496
CNS0095604Slightly white alabastrum(tetraploid) 1290.869
CNS0095605Slightly white alabastrum(tetraploid) 2259.059
CNS0095606Slightly white alabastrum(tetraploid) 3754.201
CNS0095607Whole white alabastrum(tetraploid) 1214.287
CNS0095608Whole white alabastrum(tetraploid) 2182.215
CNS0095609Whole white alabastrum(tetraploid) 3463.608
CNS0095610Silvery flower (tetraploid) 1277.941
CNS0095611Silvery flower (tetraploid) 2247.207
CNS0095612Silvery flower (tetraploid) 3473.261
CNS0095613Golden flower (tetraploid) 1184.474
CNS0095614Golden flower (tetraploid) 2214.639
CNS0095615Golden flower (tetraploid) 371.950
CRA001975CRR073297Stem 1571.955
CRR073298Stem 2430.381
CRR073299Stem 3506.650
CRR073300Leaf 1570.965
CRR073301Leaf 2654.422
CRR073302Leaf 3681.782
CRR073303Juvenile bud 1853.527
CRR073304Juvenile bud 2741.481
CRR073305Juvenile bud 3885.904
CRR073306Third green 11076.056
CRR073307Third green 21015.733
CRR073308Third green 3887.450
CRR073309Second white 1957.850
CRR073310Second white 2568.757
CRR073311Second white 3901.715
CRR073312Silver flowering 11140.173
CRR073313Silver flowering 21173.633
CRR073314Silver flowering 31173.935
CRR073315Gold flowering 1179.488
CRR073316Gold flowering 2199.726
CRR073317Gold flowering 3233.107
CRR073318Tawny withering 11174.944
CRR073319Tawny withering 21370.313
CRR073320Tawny withering 31043.993