Gene detail

Detail information of GWHGAAZE012335

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002274934.1	PREDICTED: squamosa promoter-binding-like protein 1 [Vitis vinifera]
Swissprot	tr\|Q9SMX9\|SPL1_ARATH	Squamosa promoter-binding-like protein 1
trEMBL	tr\|F6HE38\|F6HE38_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50290.1}
TAIR10	AT2G47070.1	squamosa promoter binding protein-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83911193	83919328	+
GWHAAZE00000003	mRNA	83911193	83919328	+
GWHAAZE00000003	exon	83911193	83911788	+
GWHAAZE00000003	exon	83912244	83912425	+
GWHAAZE00000003	exon	83913856	83914016	+
GWHAAZE00000003	exon	83914098	83914484	+
GWHAAZE00000003	exon	83914929	83915003	+
GWHAAZE00000003	exon	83915105	83915212	+
GWHAAZE00000003	exon	83915416	83915533	+
GWHAAZE00000003	exon	83915637	83915772	+
GWHAAZE00000003	exon	83916219	83916369	+
GWHAAZE00000003	exon	83916532	83917161	+
GWHAAZE00000003	exon	83918861	83919328	+
GWHAAZE00000003	CDS	83911193	83911788	+
GWHAAZE00000003	CDS	83912244	83912425	+
GWHAAZE00000003	CDS	83913856	83914016	+
GWHAAZE00000003	CDS	83914098	83914484	+
GWHAAZE00000003	CDS	83914929	83915003	+
GWHAAZE00000003	CDS	83915105	83915212	+
GWHAAZE00000003	CDS	83915416	83915533	+
GWHAAZE00000003	CDS	83915637	83915772	+
GWHAAZE00000003	CDS	83916219	83916369	+
GWHAAZE00000003	CDS	83916532	83917161	+
GWHAAZE00000003	CDS	83918861	83919328	+

Transcript Sequence
>GWHTAAZE012349 ATGGAGGCTAGGATTCAGGGAAAGGCACATCATTTATGTGGTCCAGTAGTGTCGGATTTGAAGGCGGTTGGGAAGAAGAGTAGGGAATGGGACTTGAACGATTGGAAATGGGATGGTGATTTGTTTACAGCAGCTCCACTCAATCCCGTACAGGCGGACTGCAGGAGTAGGCAATTATTCCCCATTGGGTCAGAATTACCTGTGAATACAAGTCTCCCCAACAGTTCCTCATCTTGCTCTGATGGAATCACTTTGGGAAATGACAAAGGAAAGAGGGAGTTGGAGAAAAGGAGGAGGGTTGTAGATGAAGATGGAGAGTTGAATGACGCATCTGGCTTGCTTAATTTGAAGCTTGGCGGGCCAGTGTGTACTGTACCAGAAGGAGAGGTGGAACAATGGGAAGGAAAGAGTGGGAAAAAAACCAAGGTTGTCGGGGGTACCTCGAATCGTGCAATTTGTCAGGTGGATGATTGTCGAGCTGATTTAAGTAGCGCAAAAGATTATCATCGACGCCATAAGGTTTGCGACTTGCATTCTAAGGCTACTAAAGCATTGGTGGGAAGTGTGATGCAAAGGTTCTGTCAGCAGTGCAGCAGGTTTCATGTTCTTCAGGAGTTCGATGAGGGCAAGAGAAGTTGTCGTAGGCGTTTGGCAGGGCACAATAGAAGGAGAAGGAAGACGCATCCAGAAAATGCAGTTAATGGAGTGTTATTAAATGATGAGCGCAGTAGCAGTTACTTATTGGTTAGTCTGCTGAGGATCCTCTCCAACATACACTCTAATAGCACAGATCAAGCAAAGGATCAGGATCTACTATCTCATCTATTGAAAAACCTTGCTAGTCTTTCTGGTACAATAAATGACAGGAATTCATCGGGGCTACAGCCTGGATGTCATAATTTGCAGGATGCAGGGACATCTATTGCTTCTCAAGAGAAGGAGTTTGCTAGGCCAATTGAAATAACACAGGAGAGAATATTTACTGATGATGCTCGGGATGGAAATTTACGAATTCCATCTTCATCACAATCCACTGTCCTATTTTCTACGAGAGAGAGTATTCCAGCCAAAGCAAATGCCTTGGACGCGACATTGACAAGGAAAAATTTGAATAATATTGACTTGAATAACGCTTACGATGCTACTCAAGACTGCACGGAAAACCTGGAGAGTTCTGGTGCCCCTGTAAATATGGTGGCAACTGAGTCTCTTGGTTGCCCTTTATGGGTACACCAAGACTCTCACAAGTCAAGCCCACCTCAGACAAGTGGGAACACGGGTTCCACGTCCACCCAATCACCATCTAGTTCCAGTGAAGAGGCTCAGAGTCGTACAGATCGAATTGTATTCAAACTCTTTGGTAAAGATCCTAGTGAATTCCCTCTTGCTCTGCGAAAACAGATCCTCGACTGGTTATCACACAGTCCTACCGACATTGAAAGTTACATTAGACCTGGCTGTATCATATTAACAATATATCTCCGAATGGAAAAATCCACATGGGAGGAGCTTTGTCGGGATCTGAGCGGCAGTTTGAGGAGGCTTCTAGATGCATCCAGTGACCCATTCTGGAGAACAGGATGGGTTTATACTAGGGTGCAGCATCATGTAGCATTTGTATATAATGGTCAGGTTGTTTTAGATACCCCACTTAAAAGCCATAAAAATTGCAGGATCTTGAGCATCAAACCAATTGCAGTTCCTATCTCTCAGAGAACTCAATTTTTAGTTAATGGCTTCAACCTTTCTCAGTCCACCACAAGGTTACTATGTGCATTGGAAGGAAAGTATCTCCTCCAACGAAATTCTTCTGAGGTGATGGAGGGAGCTGTTTCATTCATTGAGAACAAGGAGGTCCAGTCCCTTGGCTTCCCTTGCTCTATACCAGATGTTACTGGGAGAGGATTCATCGAGGTTGAGGATCACGGTCTCAGCAGTAGCTTCTTTCCTTTTATAGTTGCTGAACCCGACATTTGTTCTGAAATTTGCACATTGGAGAGCGCTATAGAGGGGCCTGAAACTGCTGGTGACATACAAGAAGAAGCTGAAAGCATAAATTCCAGCAACTTAGCTTTGGACTTTATCCATGAGATGGGTTGGCTTCTTCACAGAAGTAACTTAAACTCCAGATTGGGGGGCGCTGATGCCAACGTAGATCTATTCCCATTCAAGCGCTTTAGATGGCTTATGGAATTCTCAATAGACCATGACTGGTGTGCAGTTACTAAGAAACTCTTGGGCATTTTGTTCAGTAGTACTGTAGATGCAGGGGAACATGGGTCCATTGAACTTGCATTGGCGGAGATTGGACTCCTCCACAGAGCTGTACAGAGAAACTGCAGGCCCATGGTAGACTTCCTCTTGAGTTATTGTCCAGACAAAGGTTTAGATAACTCAGGATCCGAAAAGCAGCATTTTGACAAGCGATTTAACTTATTTAGACCTGATATGATTGGTCCGGGGGGATTGACTCCTCTTCATATAGCCGCCAGTATCGATGGATCCGAGGATGTGTTGGACGCGCTAACTAATGATACTGGATCGGTCGGAATAGAAGCGTGGGGAAGTGTTCGTGACAGTACAGGATCAACGCCCTACAATTACGCATGCCGGCAAGACCGCTGCTCTTACATTCGTTTGATCCAAAAGAAAATTAACAAGAAATCTCAAAGTGGGCATGTAGTGCTTGACATCCCTGGTTCCCTGTTAGATGATGGCAACAGTAAGCAGAAACTGGGAGATGGCCATAAATCAGCAAGAGGAGTTGTTGGTAGCCTTCAAACTGAGAAGACTATTAAGAAACCAGTTAAGAGACCCTGCAAGCTGTGTGAACATAAGTTGGGTCATGGCAGTACGAGAACATCAATGGCATTCTACAGGCCGGCAATTCTGTCGATGGTAGCAATTGCTGCTGTGTGTGTATGCGTGGCTCTTCTATTCAAGAGCTCACCTGAGGTTCTTTATGTGTTCCAGCCCTTCAGGTGGGAACTTCTTGAGTACGGCACTAGCTAA

Network for GWHGAAZE012335

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	153	226	1.60E-28

Protein Sequence

>GWHPAAZE012342
MEARIQGKAHHLCGPVVSDLKAVGKKSREWDLNDWKWDGDLFTAAPLNPVQADCRSRQLFPIGSELPVNTSLPNSSSSCSDGITLGNDKGKRELEKRRRVVDEDGELNDASGLLNLKLGGPVCTVPEGEVEQWEGKSGKKTKVVGGTSNRAICQVDDCRADLSSAKDYHRRHKVCDLHSKATKALVGSVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPENAVNGVLLNDERSSSYLLVSLLRILSNIHSNSTDQAKDQDLLSHLLKNLASLSGTINDRNSSGLQPGCHNLQDAGTSIASQEKEFARPIEITQERIFTDDARDGNLRIPSSSQSTVLFSTRESIPAKANALDATLTRKNLNNIDLNNAYDATQDCTENLESSGAPVNMVATESLGCPLWVHQDSHKSSPPQTSGNTGSTSTQSPSSSSEEAQSRTDRIVFKLFGKDPSEFPLALRKQILDWLSHSPTDIESYIRPGCIILTIYLRMEKSTWEELCRDLSGSLRRLLDASSDPFWRTGWVYTRVQHHVAFVYNGQVVLDTPLKSHKNCRILSIKPIAVPISQRTQFLVNGFNLSQSTTRLLCALEGKYLLQRNSSEVMEGAVSFIENKEVQSLGFPCSIPDVTGRGFIEVEDHGLSSSFFPFIVAEPDICSEICTLESAIEGPETAGDIQEEAESINSSNLALDFIHEMGWLLHRSNLNSRLGGADANVDLFPFKRFRWLMEFSIDHDWCAVTKKLLGILFSSTVDAGEHGSIELALAEIGLLHRAVQRNCRPMVDFLLSYCPDKGLDNSGSEKQHFDKRFNLFRPDMIGPGGLTPLHIAASIDGSEDVLDALTNDTGSVGIEAWGSVRDSTGSTPYNYACRQDRCSYIRLIQKKINKKSQSGHVVLDIPGSLLDDGNSKQKLGDGHKSARGVVGSLQTEKTIKKPVKRPCKLCEHKLGHGSTRTSMAFYRPAILSMVAIAAVCVCVALLFKSSPEVLYVFQPFRWELLEYGTS

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.969
	SRR3591706	second leaf	14.896
	SRR3591707	mature leaf	10.011
	SRR3591708	Shoot apex	25.510
	SRR3591709	Stem	29.056
	SRR3591710	White floral bud	52.232
	SRR3591711	White flower	43.047
	SRR3591712	Green floral bud	44.215
	SRR3591713	Yellow flower	35.904
SRP173429	SRR8316895	Juvenile bud stage	20.366
	SRR8316896	Juvenile bud stage	25.594
	SRR8316897	Juvenile bud stage	11.991
	SRR8316894	Third green stage	12.434
	SRR8316900	Third green stage	31.330
	SRR8316901	Third green stage	31.755
	SRR8316898	Complete white stage	14.879
	SRR8316899	Complete white stage	53.880
	SRR8316903	Complete white stage	33.382
	SRR8316902	Silver flowering stage	14.942
	SRR8316904	Silver flowering stage	24.376
	SRR8316905	Silver flowering stage	11.442
	SRR8316906	Gold flowering stage	37.995
	SRR8316907	Gold flowering stage	34.926
	SRR8316908	Gold flowering stage	39.082
SRP132670	SRR6706286	Control	36.393
	SRR6706287	Light intensity 50%	36.821
	SRR6706288	Light intensity 20%	38.398
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.379
	CNS0095593	Slightly white alabastrum(diploid) 2	20.104
	CNS0095594	Slightly white alabastrum(diploid) 3	12.745
	CNS0095595	Whole white alabastrum(diploid) 2	16.211
	CNS0095596	Whole white alabastrum(diploid) 3	13.589
	CNS0095597	Whole white alabastrum(diploid) 4	14.860
	CNS0095598	Silvery flower (diploied) 1	30.466
	CNS0095599	Silvery flower (diploied) 2	23.142
	CNS0095600	Silvery flower (diploied) 3	44.922
	CNS0095601	Golden flower (diploid) 1	26.858
	CNS0095602	Golden flower (diploid) 2	49.643
	CNS0095603	Golden flower (diploid) 3	47.188
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.045
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.938
	CNS0095606	Slightly white alabastrum(tetraploid) 3	50.354
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.317
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.525
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.966
	CNS0095610	Silvery flower (tetraploid) 1	52.680
	CNS0095611	Silvery flower (tetraploid) 2	53.849
	CNS0095612	Silvery flower (tetraploid) 3	62.725
	CNS0095613	Golden flower (tetraploid) 1	36.597
	CNS0095614	Golden flower (tetraploid) 2	52.481
	CNS0095615	Golden flower (tetraploid) 3	65.377
CRA001975	CRR073297	Stem 1	49.123
	CRR073298	Stem 2	49.259
	CRR073299	Stem 3	41.745
	CRR073300	Leaf 1	59.544
	CRR073301	Leaf 2	53.469
	CRR073302	Leaf 3	46.471
	CRR073303	Juvenile bud 1	44.753
	CRR073304	Juvenile bud 2	41.405
	CRR073305	Juvenile bud 3	70.149
	CRR073306	Third green 1	31.198
	CRR073307	Third green 2	21.698
	CRR073308	Third green 3	30.014
	CRR073309	Second white 1	25.642
	CRR073310	Second white 2	26.265
	CRR073311	Second white 3	30.601
	CRR073312	Silver flowering 1	24.044
	CRR073313	Silver flowering 2	23.544
	CRR073314	Silver flowering 3	20.076
	CRR073315	Gold flowering 1	12.764
	CRR073316	Gold flowering 2	11.541
	CRR073317	Gold flowering 3	16.854
	CRR073318	Tawny withering 1	20.829
	CRR073319	Tawny withering 2	18.457
	CRR073320	Tawny withering 3	17.803