Detail information of GWHGAAZE012331


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP14144.19.94202E-62unnamed protein product [Coffea canephora]
Swissprottr|Q9SQV1|RH40_ARATH4E-20DEAD-box ATP-dependent RNA helicase 40
trEMBLtr|A0A068V0W9|A0A068V0W9_COFCA4E-62Coffea canephora DH200=94 genomic scaffold, scaffold_80 {ECO:0000313|EMBL:CDP14144.1}
TAIR10AT3G06480.11E-18DEAD box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8382807283829037-
GWHAAZE00000003mRNA8382807283829037-
GWHAAZE00000003exon8382807283829037-
GWHAAZE00000003CDS8382807283829037-
Transcript Sequence

Network for GWHGAAZE012331

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12823DDX5, DBP2 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.477
SRR3591706second leaf19.616
SRR3591707mature leaf15.811
SRR3591708Shoot apex17.490
SRR3591709Stem15.705
SRR3591710White floral bud24.949
SRR3591711White flower30.254
SRR3591712Green floral bud19.174
SRR3591713Yellow flower20.789
SRP173429 SRR8316895Juvenile bud stage 8.940
SRR8316896Juvenile bud stage 13.314
SRR8316897Juvenile bud stage 6.054
SRR8316894Third green stage 5.550
SRR8316900Third green stage 11.517
SRR8316901Third green stage 13.190
SRR8316898Complete white stage 3.675
SRR8316899Complete white stage 14.333
SRR8316903Complete white stage 12.241
SRR8316902Silver flowering stage7.360
SRR8316904Silver flowering stage10.584
SRR8316905Silver flowering stage3.692
SRR8316906Gold flowering stage 13.416
SRR8316907Gold flowering stage 10.252
SRR8316908Gold flowering stage 16.943
SRP132670SRR6706286Control33.972
SRR6706287Light intensity 50%34.638
SRR6706288Light intensity 20%31.209
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.658
CNS0095593Slightly white alabastrum(diploid) 24.719
CNS0095594Slightly white alabastrum(diploid) 34.207
CNS0095595Whole white alabastrum(diploid) 24.988
CNS0095596Whole white alabastrum(diploid) 32.415
CNS0095597Whole white alabastrum(diploid) 44.597
CNS0095598Silvery flower (diploied) 19.468
CNS0095599Silvery flower (diploied) 28.847
CNS0095600Silvery flower (diploied) 315.502
CNS0095601Golden flower (diploid) 14.699
CNS0095602Golden flower (diploid) 217.898
CNS0095603Golden flower (diploid) 319.324
CNS0095604Slightly white alabastrum(tetraploid) 13.536
CNS0095605Slightly white alabastrum(tetraploid) 22.662
CNS0095606Slightly white alabastrum(tetraploid) 315.430
CNS0095607Whole white alabastrum(tetraploid) 13.411
CNS0095608Whole white alabastrum(tetraploid) 21.113
CNS0095609Whole white alabastrum(tetraploid) 38.495
CNS0095610Silvery flower (tetraploid) 113.277
CNS0095611Silvery flower (tetraploid) 212.224
CNS0095612Silvery flower (tetraploid) 39.014
CNS0095613Golden flower (tetraploid) 13.672
CNS0095614Golden flower (tetraploid) 210.404
CNS0095615Golden flower (tetraploid) 315.542
CRA001975CRR073297Stem 122.112
CRR073298Stem 223.370
CRR073299Stem 315.992
CRR073300Leaf 120.934
CRR073301Leaf 220.648
CRR073302Leaf 311.602
CRR073303Juvenile bud 17.718
CRR073304Juvenile bud 27.508
CRR073305Juvenile bud 319.480
CRR073306Third green 17.360
CRR073307Third green 24.715
CRR073308Third green 310.408
CRR073309Second white 12.537
CRR073310Second white 27.871
CRR073311Second white 39.260
CRR073312Silver flowering 110.718
CRR073313Silver flowering 29.321
CRR073314Silver flowering 38.740
CRR073315Gold flowering 13.664
CRR073316Gold flowering 217.600
CRR073317Gold flowering 38.218
CRR073318Tawny withering 111.538
CRR073319Tawny withering 29.695
CRR073320Tawny withering 39.017