Gene detail

Detail information of GWHGAAZE012330

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009588144.1	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 40 isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SQV1\|RH40_ARATH	0	DEAD-box ATP-dependent RNA helicase 40
trEMBL	tr\|A0A068V0W9\|A0A068V0W9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_80 {ECO:0000313\|EMBL:CDP14144.1}
TAIR10	AT3G06480.1	1E-173	DEAD box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83822613	83827843	-
GWHAAZE00000003	mRNA	83822613	83827843	-
GWHAAZE00000003	exon	83822613	83823486	-
GWHAAZE00000003	exon	83823631	83823908	-
GWHAAZE00000003	exon	83824423	83824773	-
GWHAAZE00000003	exon	83825583	83825813	-
GWHAAZE00000003	exon	83826034	83826260	-
GWHAAZE00000003	exon	83826652	83826724	-
GWHAAZE00000003	exon	83827334	83827450	-
GWHAAZE00000003	exon	83827619	83827843	-
GWHAAZE00000003	CDS	83827619	83827843	-
GWHAAZE00000003	CDS	83827334	83827450	-
GWHAAZE00000003	CDS	83826652	83826724	-
GWHAAZE00000003	CDS	83826034	83826260	-
GWHAAZE00000003	CDS	83825583	83825813	-
GWHAAZE00000003	CDS	83824423	83824773	-
GWHAAZE00000003	CDS	83823631	83823908	-
GWHAAZE00000003	CDS	83822613	83823486	-

Transcript Sequence
>GWHTAAZE012344 ATGGGTGGTCTTCCTCATCAAAATGCCTCACCTGGTCTTTCTGGTGGACTGAATCCTGTCCCAAGACCTGCCTTGAATGGCATCTATAGTAACTCAAGTGGTGGTCCCCCATTCCCAAATATTGCCATGACGAGGCCTCCTTCAATTGCTAGTGGATCTGCAGATGCTATTAATAACCTGTCAGCTGTTGAGGTTTACTATCAAAAGCATGAAATAACAGCAACGTCGTTCTTTGCCTTCGTGGAGAGGGTGGGAGGAGGTACACCTTATATAGTTATGCGGTACGTTACCTTACTGAGATGCCACAGCGGTGGCCACTGGGCCTTATGCTTAGCTGGAACGGGCGATAATGTTCCCGCTCCATTCATGTCTTTTGAAGATACTGGATTCCCTCCAGAAATATTAAGAGAGGTAAGTGCGATATCTGCTCCAGAGGAGGAGCATATGTCGTACTTATGCAACAGCAAATTCTTAGGTTTGGAGGCCGCAAAAATGGACAGTTTGAAGCCTTCCTTGGGCAATCATCTAGAAGGGTGGTTCGCCCATCATCCAAATCACAAACTTTCTGTGACTGGGATAACTAGCTTATTGGCTCCGCCTATTCTGTCTAATTGCTCCTTTTTGTTGCCTCGAGTTGTTTCAGCGCAAACATGGCCAATTGCAATGCAAAGTAAGGATATAGTTGCTATTGCCAAGACAGGATCTGGTAAAACATTAGGCTATCTGATTCCTGCTTTCATCCATTTGAGACGACGTCGAAACAATCCGCAGAATGGCCCTACAGTGGTGATTTTAGCTCCAACAAGGGAGCTTGCCACACAAATACAAGATGAAGTTGTTAAATTTGGTCGATCTTCTAGAGTCTCTTGCACGTGCTTGTATGGTGGAGCTCCTAAGGGTCCTCAGTTAAAAGAACTAGAGCGAGGAACAGATATGGTTGTGGCAACTCCTGGTCGGCTCAATGACATCCTTGAAATGAGAAAAGTTGATTTTGGGCAAGTTTCACTTCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGCTTCGAACCGCAAATCCGAAAGATCGTCAACGAGATACCTCCAGATAGGCAAACTCTAATGTATACTGCAACCTGGCCCAAAGAAGTTAGAAAAATAGCTAGTGATCTTCTTTTTAATCCTGTTCAGGTGAACATTGGCCGTGTTGATGAGCTTGCTGCAAATAAGTCCATCACTCAGTTAGTTGAACTAGTTCCTCAAATGGGGAAGCAGAGTCGGTTGGAGGAGATTCTTAGATCCCAAGAACAGGGTTCTAAGATCCTTATATTCTGTTCAACAAAAAGGCAATGCGACCAGCTTTCACGCACTATTGGTCGTAATTTTGGGGCTGCAGCAATACATGGAGACAAGTCTCAGGGTGAGAGAGATTGGGTTCTGAGCCAATTCCGCTCTGGAAAGGCCCCAATATTAGTTGCCACTGATGTTGCTGCCCGAGGGCTTGACGTAAAAGATATAAGGGTAGTGGTCAATTATGATTTTCCAACTGGAGTGGAGGATTACGTCCACCGAATTGGACGAACTGGGAGGGCAGGGGCCACAGGGGTGGCATACACTTTCTTCTCCGATGTAGACTGGAAATATGCATCTGATCTAATAAAAGTTTTGGAAGGGGCTAACCAGGCTGTACCCAAAGAGGTGCGAGAGATGGCTTTGCGTGGTGGGCCTGGCTTTGGAAGGGATCGTGGTGGGATGGTCCGCCATGATTCCAGTGGCGGTGGGAGGTGGGACTCTGGTGGTCGTGGTGGCAGTAGAGATGGTGGCTTTGGCGGTCGTGGTGGAATGAGAGACGGTAATTTTGGCAGCCGTGGCAGCATGAGGGATGGAAACTTTGGCGGCCGTGGTGGGATGAGGGATGGAAACTTTGGCGGCCGTGGAGGCAGTAGAGGTGGTGGCTTTGGTGGTCCTCCCGATCGAGATAGGAAAGAACGTGGCCCACACGATCGATTTGATGGGCGTGGATTTGGTCGAGGTAGGGGCCGAGGACGGTTTGATAACAGAAGAGATGTTGCAGAGCGGAGTAGAGGCAGAAGTTACAGCTCCAGCCCAGAAAGGGTTCGAACGTATGGCCGGAGCCGGAGTAGAAGCTGGAGCCGGAGCAGCTCTGGCAGCCCTAGGCGTAGCCGCAGCCGTAGTCCTAACAGATATGTTAGGCGCCGTGAATCAAAATTTGACCAGAGGGAGGTCCCTCTGCAGGAAGGTAAGGTCCCTAAACCTGTTGGCCCAGCAAATGATGAAACTTCTGGAGCGGGCCCGTTAAAGCAGTTACTGTTGGGTGAGAGTATTGGTCCAGGAAGTACTACCGAACTGGGCAATCCAATTACCAAGCCTTGA

Network for GWHGAAZE012330

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	214	381	1.10E-45
PF00271.32	Helicase_C	418	526	6.60E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12823	DDX5, DBP2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.680
	SRR3591706	second leaf	23.375
	SRR3591707	mature leaf	23.281
	SRR3591708	Shoot apex	31.747
	SRR3591709	Stem	26.805
	SRR3591710	White floral bud	31.656
	SRR3591711	White flower	39.725
	SRR3591712	Green floral bud	34.177
	SRR3591713	Yellow flower	28.261
SRP173429	SRR8316895	Juvenile bud stage	15.567
	SRR8316896	Juvenile bud stage	21.223
	SRR8316897	Juvenile bud stage	10.698
	SRR8316894	Third green stage	7.687
	SRR8316900	Third green stage	15.837
	SRR8316901	Third green stage	22.387
	SRR8316898	Complete white stage	6.408
	SRR8316899	Complete white stage	24.875
	SRR8316903	Complete white stage	14.374
	SRR8316902	Silver flowering stage	12.098
	SRR8316904	Silver flowering stage	13.610
	SRR8316905	Silver flowering stage	5.942
	SRR8316906	Gold flowering stage	18.482
	SRR8316907	Gold flowering stage	17.329
	SRR8316908	Gold flowering stage	20.614
SRP132670	SRR6706286	Control	21.511
	SRR6706287	Light intensity 50%	25.282
	SRR6706288	Light intensity 20%	25.827
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.891
	CNS0095593	Slightly white alabastrum(diploid) 2	23.552
	CNS0095594	Slightly white alabastrum(diploid) 3	20.425
	CNS0095595	Whole white alabastrum(diploid) 2	17.772
	CNS0095596	Whole white alabastrum(diploid) 3	8.603
	CNS0095597	Whole white alabastrum(diploid) 4	11.196
	CNS0095598	Silvery flower (diploied) 1	23.765
	CNS0095599	Silvery flower (diploied) 2	17.087
	CNS0095600	Silvery flower (diploied) 3	20.473
	CNS0095601	Golden flower (diploid) 1	20.239
	CNS0095602	Golden flower (diploid) 2	21.704
	CNS0095603	Golden flower (diploid) 3	21.406
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.588
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.931
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.647
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.692
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.046
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.400
	CNS0095610	Silvery flower (tetraploid) 1	21.961
	CNS0095611	Silvery flower (tetraploid) 2	13.574
	CNS0095612	Silvery flower (tetraploid) 3	14.152
	CNS0095613	Golden flower (tetraploid) 1	11.415
	CNS0095614	Golden flower (tetraploid) 2	20.581
	CNS0095615	Golden flower (tetraploid) 3	19.133
CRA001975	CRR073297	Stem 1	25.594
	CRR073298	Stem 2	25.708
	CRR073299	Stem 3	18.616
	CRR073300	Leaf 1	24.366
	CRR073301	Leaf 2	25.129
	CRR073302	Leaf 3	13.414
	CRR073303	Juvenile bud 1	11.801
	CRR073304	Juvenile bud 2	7.725
	CRR073305	Juvenile bud 3	18.121
	CRR073306	Third green 1	7.337
	CRR073307	Third green 2	5.660
	CRR073308	Third green 3	8.424
	CRR073309	Second white 1	5.863
	CRR073310	Second white 2	7.749
	CRR073311	Second white 3	10.013
	CRR073312	Silver flowering 1	10.025
	CRR073313	Silver flowering 2	8.646
	CRR073314	Silver flowering 3	9.458
	CRR073315	Gold flowering 1	9.435
	CRR073316	Gold flowering 2	18.782
	CRR073317	Gold flowering 3	7.444
	CRR073318	Tawny withering 1	15.891
	CRR073319	Tawny withering 2	21.181
	CRR073320	Tawny withering 3	17.858