Gene detail

Detail information of GWHGAAZE012306

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279385.1	3.4206E-107	PREDICTED: probable WRKY transcription factor 48 [Vitis vinifera]
Swissprot	tr\|O22900\|WRK23_ARATH	5E-62	Probable WRKY transcription factor 23
trEMBL	tr\|D7SYJ2\|D7SYJ2_VITVI	1E-107	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22862.3}
TAIR10	AT5G49520.1	9E-40	WRKY DNA-binding protein 48

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83351993	83353435	+
GWHAAZE00000003	mRNA	83351993	83353435	+
GWHAAZE00000003	exon	83351993	83352381	+
GWHAAZE00000003	exon	83352680	83352823	+
GWHAAZE00000003	exon	83352967	83353435	+
GWHAAZE00000003	CDS	83351993	83352381	+
GWHAAZE00000003	CDS	83352680	83352823	+
GWHAAZE00000003	CDS	83352967	83353435	+

Transcript Sequence
>GWHTAAZE012320 ATGGAGAAGAAAATAGAGAAGGAGGATTCAAATACTAATAATAATAATCCGATGGCGAATTTGGCATTCTCCGATCAGATGAGCTTTAATCTGCCGGGAATATTCGACATGCCATGTGACGGTGAAAAAGGTTCTCTAGGGTTCATGGAAATGTTAGATTACGGTTCCAATTCGTTATTCGATATGCTCCAGACTTCTTCTACTCCACTCCCCCTTCCTCCTCCTCCGATTCCTTCGCCGGCAGCTTCCGCTATGCCGGAGTCTTCGGAGGTGGTCAACACTCCGGCGACTCCTAATTCTTCCTCAATTTCTTCGTCTTCGACAGAAGCGGCAAATGACGAACAACAACAACAGAGCAAAACAGTCGAAGATGAAAAAACTAAGAAACAGTTGAAGGCGAAAAAGAAGAATCCAAAAAGGCAAAGAGAGCCGAGGTTTGCGTTTATGACTAAGAGTGAAGTTGATCACTTGGATGATGGATATAGATGGCGAAAATACGGCCAAAAAGCTGTTAAAAACAGCCCTTTCCCAAGGAGCTACTATCGGTGCACTACAGCTGCGTGTGGTGTAAAGAAGAGAGTGGAAAGATCGTGTGAGGATTCATCCATAGTCGTAACAACTTACGAAGGTACGCACACGCATCCGTGCCCTGTGACGCCACGAGGGAGCATTGGACTTTTGCCCGAAACGGCCAATTTTGGCGGTGGCGGCTGTGGAGGATCAGGTGGTTCTTCTTTTATTATTCCTCAAATTCGCCAGTATCAGCAATTACAACAACAACAGCAGCAACACCAATATTTTAGTAATCGATTAATGCCTTCGTTTAATTTTGGTGGTACTAGTAGTAATAATAATAATTCATCATTTGCTACTACTACTTTTGTACAAGAGAGACGGATATACCCCTCGCCTTCGGCTTCATCTAGAGATCATGGGCTTCTTCAGGACATGGTACCTTCACAAGTGCGAAAGGAGCTGAAGGAGGAAGAGCGAGAGTTGTAA

Network for GWHGAAZE012306

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	158	215	1.20E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.927
	SRR3591706	second leaf	0.318
	SRR3591707	mature leaf	0.905
	SRR3591708	Shoot apex	2.607
	SRR3591709	Stem	6.309
	SRR3591710	White floral bud	3.966
	SRR3591711	White flower	3.280
	SRR3591712	Green floral bud	3.560
	SRR3591713	Yellow flower	6.665
SRP173429	SRR8316895	Juvenile bud stage	1.650
	SRR8316896	Juvenile bud stage	1.606
	SRR8316897	Juvenile bud stage	1.062
	SRR8316894	Third green stage	0.708
	SRR8316900	Third green stage	1.470
	SRR8316901	Third green stage	2.301
	SRR8316898	Complete white stage	0.810
	SRR8316899	Complete white stage	3.900
	SRR8316903	Complete white stage	1.613
	SRR8316902	Silver flowering stage	1.551
	SRR8316904	Silver flowering stage	1.323
	SRR8316905	Silver flowering stage	0.746
	SRR8316906	Gold flowering stage	2.777
	SRR8316907	Gold flowering stage	2.274
	SRR8316908	Gold flowering stage	2.418
SRP132670	SRR6706286	Control	2.559
	SRR6706287	Light intensity 50%	2.885
	SRR6706288	Light intensity 20%	2.999
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.693
	CNS0095593	Slightly white alabastrum(diploid) 2	4.357
	CNS0095594	Slightly white alabastrum(diploid) 3	4.109
	CNS0095595	Whole white alabastrum(diploid) 2	2.350
	CNS0095596	Whole white alabastrum(diploid) 3	2.140
	CNS0095597	Whole white alabastrum(diploid) 4	2.668
	CNS0095598	Silvery flower (diploied) 1	2.885
	CNS0095599	Silvery flower (diploied) 2	3.694
	CNS0095600	Silvery flower (diploied) 3	2.859
	CNS0095601	Golden flower (diploid) 1	3.393
	CNS0095602	Golden flower (diploid) 2	3.988
	CNS0095603	Golden flower (diploid) 3	3.976
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.600
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.116
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.437
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.529
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.913
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.411
	CNS0095610	Silvery flower (tetraploid) 1	1.194
	CNS0095611	Silvery flower (tetraploid) 2	1.583
	CNS0095612	Silvery flower (tetraploid) 3	1.644
	CNS0095613	Golden flower (tetraploid) 1	2.020
	CNS0095614	Golden flower (tetraploid) 2	2.723
	CNS0095615	Golden flower (tetraploid) 3	1.823
CRA001975	CRR073297	Stem 1	2.242
	CRR073298	Stem 2	1.542
	CRR073299	Stem 3	1.685
	CRR073300	Leaf 1	3.667
	CRR073301	Leaf 2	1.261
	CRR073302	Leaf 3	0.450
	CRR073303	Juvenile bud 1	1.023
	CRR073304	Juvenile bud 2	1.102
	CRR073305	Juvenile bud 3	1.088
	CRR073306	Third green 1	1.925
	CRR073307	Third green 2	1.483
	CRR073308	Third green 3	1.298
	CRR073309	Second white 1	0.237
	CRR073310	Second white 2	1.615
	CRR073311	Second white 3	0.847
	CRR073312	Silver flowering 1	0.541
	CRR073313	Silver flowering 2	0.406
	CRR073314	Silver flowering 3	0.597
	CRR073315	Gold flowering 1	1.333
	CRR073316	Gold flowering 2	5.674
	CRR073317	Gold flowering 3	2.452
	CRR073318	Tawny withering 1	43.160
	CRR073319	Tawny withering 2	49.453
	CRR073320	Tawny withering 3	33.517