Gene detail

Detail information of GWHGAAZE012296

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011100758.1	0	PREDICTED: probable serine/threonine-protein kinase DDB_G0282963 isoform X2 [Sesamum indicum]
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	2E-94	Serine/threonine-protein kinase EDR1
trEMBL	tr\|B9HX25\|B9HX25_POPTR	0	Kinase family protein {ECO:0000313\|EMBL:EEF01121.2}
TAIR10	AT5G49470.3	0	PAS domain-containing protein tyrosine kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83158430	83165841	+
GWHAAZE00000003	mRNA	83158430	83165841	+
GWHAAZE00000003	exon	83158430	83158821	+
GWHAAZE00000003	exon	83159130	83159541	+
GWHAAZE00000003	exon	83159634	83159861	+
GWHAAZE00000003	exon	83159959	83160289	+
GWHAAZE00000003	exon	83160714	83160754	+
GWHAAZE00000003	exon	83161230	83161298	+
GWHAAZE00000003	exon	83162106	83162206	+
GWHAAZE00000003	exon	83162328	83162406	+
GWHAAZE00000003	exon	83162811	83162909	+
GWHAAZE00000003	exon	83163760	83163809	+
GWHAAZE00000003	exon	83163916	83163997	+
GWHAAZE00000003	exon	83164115	83164209	+
GWHAAZE00000003	exon	83165174	83165841	+
GWHAAZE00000003	CDS	83158430	83158821	+
GWHAAZE00000003	CDS	83159130	83159541	+
GWHAAZE00000003	CDS	83159634	83159861	+
GWHAAZE00000003	CDS	83159959	83160289	+
GWHAAZE00000003	CDS	83160714	83160754	+
GWHAAZE00000003	CDS	83161230	83161298	+
GWHAAZE00000003	CDS	83162106	83162206	+
GWHAAZE00000003	CDS	83162328	83162406	+
GWHAAZE00000003	CDS	83162811	83162909	+
GWHAAZE00000003	CDS	83163760	83163809	+
GWHAAZE00000003	CDS	83163916	83163997	+
GWHAAZE00000003	CDS	83164115	83164209	+
GWHAAZE00000003	CDS	83165174	83165303	+
GWHAAZE00000003	three_prime_UTR	83165304	83165841	+

Transcript Sequence
>GWHTAAZE012310 ATGGATAATTTACCGCCGGCGGAGGAGCTACTGAAGAAGATAGAAGAGCTTGAAGCAGGCCATGCTCAGCTCAAGCAACAGATGTCGAGGCTCAAGGTCTCCGAAGATCAGAGAAATGACCGACAGAGGTCTCACTCCATATCGCCGCAGCGGTCGGTCCGCCGTAGAGGCGGCGGCAGTGCGGCGGCGGTGTTGAGGTCGACGTCGTTCCGGCATTCGTCGCCTTTGCAGAGGGAGAGTCGGAATCGTGAAGACGACAATAGCAACTCGGATGTTGGGGAAAGGGGGGAGCCGTCGGTTGTGAAGTTCACAGATAGACAGTATTTGAATATATTGCAGTCAATGGGGCAATCTGTTCATATCTACGATCTCAACGCGAAAGTAATTTACTGGAATCGAACTGCAGAGGACCTTTATGGCTATTCTGTTGCAGAAGCTATTGGGCATGATGTCATTGAGCTCCTTGCAGATGTCAAACATTTTGAATTTGCTAATGATATAATAGCACGTGTGCTTGCGGGGGAGAGCTGGACTGGGCAATTCCCTGTTAAGAACAAGAGAGGGGAGAGGTTTCATGTTACTACAACCAACACCCCATTTTATGATGACAATGGCGTTTTGGTTGGCATTATTTGTGTATCAAGTAATTCAAGAACATTTGAAGACACGAGGGCCAGGCCGGGTGCAAAGCACTTGGAAGCAGATCCAAGCTTTAGCAGACCAAGGCGCATTGCCTCGGCCAGGCTTGGGCTTGATCCGCAGCAGCCTCTACAAGTTGCAATTGCCTCAAAGTTATCGGATTTGGCTTCAAAGGTGAGCAACAAGGTGAAGTCAAAAATGCGGACTGGGGACAACATCATGGACCGTGAGGGTGGGAGTGGAGATAGTCATCATTCTGATCATGGTTTGTCAGATGCTCTCTCTGACCATAGGGATGATGCAACTTCTAGTGGAGCTAGCACCCCCAGAGGAGACGCTCCCCCATCTGTATTTGGTGTATTTTCTAATGTCGTCCATGAGGAGCATACTCCTGAATGTCATGGCCATGGAAAGGAACTGAGCAGGGTGGATCCGAGGCAAGGACTGCCCGCCGGGTGGCCCTGGTTACAACATGATCAAGAAAATGAATCGGTGGGTCATCAGAGGAGTCCTCTTGCTGCAAAACCAGAAATTCGGGTAGCTGAAACTAATCGGACTGCTAATAATGAGGCATCACGGTTCTGGTCCCCACCATTAAATGTTAACAGCACAAGCAGTGCAAGTAGCTGTGGGAGTACCACTACTCAAGTGGACACAGATTCTGCCGGCTCAGATTACGAAATTTCATGGGAAGATTTGAAAGTTGGAGAACAGATTGGGCAAGGTTCTTGTGGGACCGTATATCATGCTCTGTGGTATGGATCAGATGTTGCCATCAAGATATTCTCCAGGCAAGAATATTCAGATGATTTGATACTTTCCTTTAGACAAGAGGTGTCTCTTATGAAGAGACTGCGACATCCAAACATACTGCTCTTTATGGGCGCAATAACTTCACCTCAGCGTCTCTGCATTGTTACAGAGTTCCTTCCCCGTGGAAGTTTATTCCGGTTAATACAGAGGAATGCATCCAAATTAGACTGGAGACGGCGTGTTCACATGGCTTTGGATATAGCACGAGGCGTCAATTATCTTCACCACTGCAACCCTCCTATCATTCATCGTGATTTGAAGTCATCAAATCTTCTTGTCGATAAGAACTGGAGTGTGAAGCCTCAATGGATGGCTCCAGAAGTTCTTCGTAATGAGCCATCAGATGAGAAGTCTGATGTGTATAGCTTTGGGGTGATATTATGGGAACTTGCCACTGAGAAGATCCCTTGGGATAATCTCAATTCAATGCAGGTGATTGGAGCTGTAGGATTTATGAACCAACGGTTAGATATCCCAAAAAATGTTGATCCACAATGGGCTGATATAATTGAGAGCTGTTGGCACAGGGAACCACAATCCCGGCCAACATTCCAAGAACTACTGGAGAAGCTTAAAGATCTGAACAGGCAGTGTACCCTTCAGTTTCAGGCAGCCCGTTCAGCCACAGGAGATAGCAGCACCCAAAAGGAACTGTAGAGGCAATATTGTTCACTTTTCCACTTGATTTTACTTATAGCCTCTGCAGAAAAGCATTGGAATCTTTTTGAAACGGCTCTACTGATGCTGATGTGACTGGTGCCACAAATTTGCTTCTAGTGTCTGTAACCACAAATTCAAATGCAGAGCCAATCTCAGTTGCGTCGATTTAAGAAAGCAAATGAAGTCAAGAGCAGCTGTCAAAGGTCTCATGTGGCTTGCGTGTTTCATTATTTATTGACATTATGAGATCCCATCTGTTGGTGTCTATTATCGAGTCCCCTTTCATCAGAATCATTTCATTCACCGGTTAGGGATTTTATGTGATTGAATTCATTTTGTAAAGATGATTGTGACTCATTTATTTGATACATTAGGGTCTTGAGACGAGCCCTGAAATTACTTGTACATAAAATACCCTCCTAAATCTCCCATTTAAGGTAGCACACCATTGGTCAAAATTGTAAGTTTTTGTGTTATGTAGTTCAATCAAGTTACTGCTTTATGAAAGTTGATCCAACTAATTACCTGGTACAAA

Network for GWHGAAZE012296

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00989.26	PAS	107	213	1.40E-11
PF07714.18	PK_Tyr_Ser-Thr	446	584	2.90E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL_CTR1-DRK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.856
	SRR3591706	second leaf	37.107
	SRR3591707	mature leaf	53.514
	SRR3591708	Shoot apex	32.520
	SRR3591709	Stem	52.441
	SRR3591710	White floral bud	29.394
	SRR3591711	White flower	21.925
	SRR3591712	Green floral bud	27.019
	SRR3591713	Yellow flower	17.888
SRP173429	SRR8316895	Juvenile bud stage	17.341
	SRR8316896	Juvenile bud stage	22.414
	SRR8316897	Juvenile bud stage	10.832
	SRR8316894	Third green stage	8.986
	SRR8316900	Third green stage	20.784
	SRR8316901	Third green stage	23.176
	SRR8316898	Complete white stage	8.538
	SRR8316899	Complete white stage	30.595
	SRR8316903	Complete white stage	14.681
	SRR8316902	Silver flowering stage	7.701
	SRR8316904	Silver flowering stage	11.277
	SRR8316905	Silver flowering stage	4.917
	SRR8316906	Gold flowering stage	18.634
	SRR8316907	Gold flowering stage	15.080
	SRR8316908	Gold flowering stage	21.361
SRP132670	SRR6706286	Control	29.164
	SRR6706287	Light intensity 50%	28.485
	SRR6706288	Light intensity 20%	28.463
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.851
	CNS0095593	Slightly white alabastrum(diploid) 2	18.943
	CNS0095594	Slightly white alabastrum(diploid) 3	17.774
	CNS0095595	Whole white alabastrum(diploid) 2	12.159
	CNS0095596	Whole white alabastrum(diploid) 3	13.348
	CNS0095597	Whole white alabastrum(diploid) 4	15.696
	CNS0095598	Silvery flower (diploied) 1	22.729
	CNS0095599	Silvery flower (diploied) 2	15.298
	CNS0095600	Silvery flower (diploied) 3	19.785
	CNS0095601	Golden flower (diploid) 1	16.750
	CNS0095602	Golden flower (diploid) 2	22.808
	CNS0095603	Golden flower (diploid) 3	21.678
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.861
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.303
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.152
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.605
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.080
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.188
	CNS0095610	Silvery flower (tetraploid) 1	20.670
	CNS0095611	Silvery flower (tetraploid) 2	18.861
	CNS0095612	Silvery flower (tetraploid) 3	11.806
	CNS0095613	Golden flower (tetraploid) 1	11.731
	CNS0095614	Golden flower (tetraploid) 2	16.408
	CNS0095615	Golden flower (tetraploid) 3	11.547
CRA001975	CRR073297	Stem 1	25.849
	CRR073298	Stem 2	24.098
	CRR073299	Stem 3	18.778
	CRR073300	Leaf 1	27.548
	CRR073301	Leaf 2	28.368
	CRR073302	Leaf 3	19.471
	CRR073303	Juvenile bud 1	21.525
	CRR073304	Juvenile bud 2	14.089
	CRR073305	Juvenile bud 3	26.501
	CRR073306	Third green 1	5.940
	CRR073307	Third green 2	6.875
	CRR073308	Third green 3	9.021
	CRR073309	Second white 1	2.351
	CRR073310	Second white 2	5.135
	CRR073311	Second white 3	4.470
	CRR073312	Silver flowering 1	2.751
	CRR073313	Silver flowering 2	1.319
	CRR073314	Silver flowering 3	1.940
	CRR073315	Gold flowering 1	20.240
	CRR073316	Gold flowering 2	41.229
	CRR073317	Gold flowering 3	14.817
	CRR073318	Tawny withering 1	40.463
	CRR073319	Tawny withering 2	40.467
	CRR073320	Tawny withering 3	36.780