Gene detail

Detail information of GWHGAAZE012293

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007035804.1	ATP citrate lyase subunit B 2 isoform 1 [Theobroma cacao]
Swissprot	tr\|Q93VT8\|ACLB1_ORYSJ	ATP-citrate synthase beta chain protein 1
trEMBL	tr\|A0A061ENZ3\|A0A061ENZ3_THECC	ATP citrate lyase subunit B 2 isoform 1 {ECO:0000313\|EMBL:EOY06730.1}
TAIR10	AT5G49460.1	ATP citrate lyase subunit B 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83126974	83132566	+
GWHAAZE00000003	mRNA	83126974	83132566	+
GWHAAZE00000003	exon	83126974	83127073	+
GWHAAZE00000003	exon	83127166	83127268	+
GWHAAZE00000003	exon	83127551	83127616	+
GWHAAZE00000003	exon	83127699	83127822	+
GWHAAZE00000003	exon	83127933	83128067	+
GWHAAZE00000003	exon	83128414	83128474	+
GWHAAZE00000003	exon	83128565	83128641	+
GWHAAZE00000003	exon	83129005	83129160	+
GWHAAZE00000003	exon	83129408	83129536	+
GWHAAZE00000003	exon	83129626	83129758	+
GWHAAZE00000003	exon	83129872	83129999	+
GWHAAZE00000003	exon	83130235	83130340	+
GWHAAZE00000003	exon	83130460	83130536	+
GWHAAZE00000003	exon	83131076	83131146	+
GWHAAZE00000003	exon	83131280	83131564	+
GWHAAZE00000003	exon	83132065	83132566	+
GWHAAZE00000003	CDS	83126974	83127073	+
GWHAAZE00000003	CDS	83127166	83127268	+
GWHAAZE00000003	CDS	83127551	83127616	+
GWHAAZE00000003	CDS	83127699	83127822	+
GWHAAZE00000003	CDS	83127933	83128067	+
GWHAAZE00000003	CDS	83128414	83128474	+
GWHAAZE00000003	CDS	83128565	83128641	+
GWHAAZE00000003	CDS	83129005	83129160	+
GWHAAZE00000003	CDS	83129408	83129536	+
GWHAAZE00000003	CDS	83129626	83129758	+
GWHAAZE00000003	CDS	83129872	83129999	+
GWHAAZE00000003	CDS	83130235	83130340	+
GWHAAZE00000003	CDS	83130460	83130536	+
GWHAAZE00000003	CDS	83131076	83131146	+
GWHAAZE00000003	CDS	83131280	83131564	+
GWHAAZE00000003	CDS	83132065	83132140	+
GWHAAZE00000003	three_prime_UTR	83132141	83132566	+

Transcript Sequence
>GWHTAAZE012307 ATGGCTACTGGACAAATTTTCTCCCGGACTACACAAGCATTGTTCTACAATTACAAACAACTACCCATCCAACGGATGCTCGACTTCGACTTTCTCTGTGGGAGGGAAACACCTTCAGTTGCTGGAATTATAAATCCTGGTGCTGAAGGATTTCAGAAACTATTTTTTGGCCAGGAGGAAATTGCCATACCAGTACATTCAAGCATTGAAGCTGCTTGTGCTGCACATCCCACTGCTGATGTTTTCATCAACTTTGCATCATTTAGAAGTGCTGCTGCTTCATCCAAGGCTGCTCTTAAACAACCAACCATTAGAGTTGTGGCTATAATAGCCGAAGGAGTTCCCGAATCGGACGCAAAGGAGTTGATTGCATATGCAAGGACGAACAATAAGGTTGTTATAGGACCTGCTACTGTTGGTGGTATTCAAGCTGGAGCTTTTAAGATTGGTGACACTGCTGGAACAATTGATAACATCATTCAGTGCAAGCTGTACAGGCCTGGGTCTGTTGGCTTTGTGTCGAAATCTGGTGGGATGTCTAATGAAATGTACAGTACAATTGCCCGTGTAACAGATGGAATTTATGAAGGTATTGCAATTGGAGGAGATGTTTTCCCAGGCTCTACTCTTTCTGATCATGTTCTTCGGTTCAACAACATTCCGCAGATTAAAATGATGGTTGTACTTGGGGAACTTGGCGGACGAGATGAGTATTCCCTAGTTGAAGCCCTCAAGCAGGGAAAAATAAATAAACCAGTGGTTGCTTGGGTCAGTGGAACTTGTGCACGTCTTTTCAAGTCAGAAGTACAATTCGGCCATGCGGGGGCAAAGAGTGGAGGTGAGATGGAATCTGCACAAGCAAAGAATCAAGCACTTAGAGAAGCGGGAGCTGTGGTCCCCACTTCATATGAAGCATTTGAATTTTCGATTAAAGAAACTTTTGAGAAATTGGCTGAGGCAGGAAGGATTACTCCTGTAAAGGAAGTTAAGCCTCCACAAATACCCGAAGATCTTAACATTGCAATTAAGAGTGGGAAAGTACGAGCCCCAACTCATATTATTTCTACTATATCTGATGATAGAGGTGAAGAGCCATGTTATGCAGGCGTCGCCATGTCATCAATTGTTGAACAAGGATATGGAGTTGGTGATGTCATTTCCCTATTGTGGTTCAAGCGCAGTCTTCCTCGTTACTGTACACATTTTATTGAGATTTGCATCATGTTATGTGCCGATCATGGTCCTTGTGTCTCTGGTGCTCACAATTCAATTGTAACTGCGAGGGCAGGAAAAGACCTTGTGTCCAGCCTTGTCTCTGGTTTACTAACTATTGGTCCCCGATTTGGGGGTGCTATTGATGATGCTGCTCGATACTTCAAGGATGCTTGTGACAGGGGCCTTACACCCTATGAGTTTGTGGAATCTATGAAAAAGAAGGGCATTCGTGTTCCAGGAATCGGGCACAGGATCAAGAGCGCCGATAACAGAGATAAGAGAGTCGAGCTACTACAAAAATTTGCACGAACACATTTCCCGGCAGTGAAGTACATGGAATATGCAGTTCAAGTTGAAACCTACACTCTCTCAAAGGCAAATAATCTAGTCCTTAATGTGGATGGTGCTATTGGTTCCCTATTCTTGGATCTTCTTGCTGGCAGTGGAATGTTCACCAAGCCGGAGATAGACGAGATTGTGGAGATCGGTTACCTCAATGGGCTATTCGTGCTAGCCCGTTCCATTGGTCTCATCGGGCACACCTTTGACCAGAAGAGATTGAAGCAGCCGCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGAGAGGTCCTACGCGCATATTTGCATTTCAATTTTTTTCAGTACGAGAGATCTGTTGTGATGATATGATTCAGTTGTTACAGACATAGTGTTTTGCTCTCTGCTATAAAGTGGAGGAGGTTGAGCGCTTCATTTGTTTGTAAGTTTTAACGGAAAAGTTTATTAAGAGAGTTCTTGAATTGTTGTTTTAAGGATTATTTAGTTGTTACCATGAAGAAGAGATCATATTGGCCTTTCTAGTCTATAAAAAGGAATAATAATTGATACACTGGATTGATTGTGCTTTGTGTTCAGCTAGTGTTTGTTGTTCATTCTCTTGTTGTATGATGTGCAACTTCTCGTGTTTGTGGGGCTATACGCTGTAGATAAGCTGTATTGGTTATGATTATGGTTATTGTTTGTTGAGCCAATGATGTTGTGTCCTAATTG

Network for GWHGAAZE012293

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00549.20	Ligase_CoA	174	298	1.40E-11
PF00285.22	Citrate_synt	399	597	2.10E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01648	ACLY	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Citrate cycle	map00020
		Carbon fixation pathways in prokaryotes	map00720

Gene Ontology

GO term	Ontology	Name
GO:0046912	molecular_function	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	191.341
	SRR3591706	second leaf	120.055
	SRR3591707	mature leaf	39.331
	SRR3591708	Shoot apex	107.121
	SRR3591709	Stem	104.028
	SRR3591710	White floral bud	178.519
	SRR3591711	White flower	163.270
	SRR3591712	Green floral bud	178.540
	SRR3591713	Yellow flower	166.816
SRP173429	SRR8316895	Juvenile bud stage	73.123
	SRR8316896	Juvenile bud stage	90.585
	SRR8316897	Juvenile bud stage	47.827
	SRR8316894	Third green stage	41.180
	SRR8316900	Third green stage	155.193
	SRR8316901	Third green stage	137.198
	SRR8316898	Complete white stage	88.218
	SRR8316899	Complete white stage	160.163
	SRR8316903	Complete white stage	125.073
	SRR8316902	Silver flowering stage	89.268
	SRR8316904	Silver flowering stage	122.953
	SRR8316905	Silver flowering stage	59.314
	SRR8316906	Gold flowering stage	260.392
	SRR8316907	Gold flowering stage	201.601
	SRR8316908	Gold flowering stage	243.715
SRP132670	SRR6706286	Control	145.343
	SRR6706287	Light intensity 50%	160.762
	SRR6706288	Light intensity 20%	177.339
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	79.336
	CNS0095593	Slightly white alabastrum(diploid) 2	82.341
	CNS0095594	Slightly white alabastrum(diploid) 3	71.918
	CNS0095595	Whole white alabastrum(diploid) 2	81.754
	CNS0095596	Whole white alabastrum(diploid) 3	89.507
	CNS0095597	Whole white alabastrum(diploid) 4	83.235
	CNS0095598	Silvery flower (diploied) 1	70.854
	CNS0095599	Silvery flower (diploied) 2	87.450
	CNS0095600	Silvery flower (diploied) 3	196.111
	CNS0095601	Golden flower (diploid) 1	64.470
	CNS0095602	Golden flower (diploid) 2	113.445
	CNS0095603	Golden flower (diploid) 3	114.535
	CNS0095604	Slightly white alabastrum(tetraploid) 1	111.364
	CNS0095605	Slightly white alabastrum(tetraploid) 2	90.663
	CNS0095606	Slightly white alabastrum(tetraploid) 3	208.043
	CNS0095607	Whole white alabastrum(tetraploid) 1	76.348
	CNS0095608	Whole white alabastrum(tetraploid) 2	76.911
	CNS0095609	Whole white alabastrum(tetraploid) 3	219.597
	CNS0095610	Silvery flower (tetraploid) 1	192.190
	CNS0095611	Silvery flower (tetraploid) 2	195.183
	CNS0095612	Silvery flower (tetraploid) 3	270.430
	CNS0095613	Golden flower (tetraploid) 1	101.035
	CNS0095614	Golden flower (tetraploid) 2	154.636
	CNS0095615	Golden flower (tetraploid) 3	72.527
CRA001975	CRR073297	Stem 1	110.843
	CRR073298	Stem 2	105.246
	CRR073299	Stem 3	96.996
	CRR073300	Leaf 1	152.929
	CRR073301	Leaf 2	144.031
	CRR073302	Leaf 3	153.899
	CRR073303	Juvenile bud 1	180.443
	CRR073304	Juvenile bud 2	205.345
	CRR073305	Juvenile bud 3	176.677
	CRR073306	Third green 1	264.445
	CRR073307	Third green 2	173.750
	CRR073308	Third green 3	214.048
	CRR073309	Second white 1	211.225
	CRR073310	Second white 2	168.746
	CRR073311	Second white 3	159.087
	CRR073312	Silver flowering 1	175.664
	CRR073313	Silver flowering 2	165.743
	CRR073314	Silver flowering 3	151.954
	CRR073315	Gold flowering 1	34.749
	CRR073316	Gold flowering 2	42.849
	CRR073317	Gold flowering 3	36.989
	CRR073318	Tawny withering 1	115.951
	CRR073319	Tawny withering 2	91.750
	CRR073320	Tawny withering 3	114.358