Gene detail

Detail information of GWHGAAZE012284

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010094310.1	1.71932E-65	DNA-directed RNA polymerase II subunit [Morus notabilis]
Swissprot	tr\|Q8L5V0\|RPB9B_ARATH	2E-44	DNA-directed RNA polymerases II, IV and V subunit 9B
trEMBL	tr\|W9QW59\|W9QW59_9ROSA	6E-66	DNA-directed RNA polymerase subunit {ECO:0000256\|RuleBase:RU004351}
TAIR10	AT4G16265.1	5E-36	RNA polymerases M/15 Kd subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82966696	82971210	+
GWHAAZE00000003	mRNA	82966696	82971210	+
GWHAAZE00000003	exon	82966696	82966772	+
GWHAAZE00000003	exon	82966942	82967017	+
GWHAAZE00000003	exon	82967813	82967994	+
GWHAAZE00000003	exon	82970221	82970240	+
GWHAAZE00000003	exon	82970568	82970743	+
GWHAAZE00000003	exon	82970864	82971020	+
GWHAAZE00000003	exon	82971152	82971210	+
GWHAAZE00000003	five_prime_UTR	82966696	82966743	+
GWHAAZE00000003	CDS	82966744	82966772	+
GWHAAZE00000003	CDS	82966942	82967017	+
GWHAAZE00000003	CDS	82967813	82967994	+
GWHAAZE00000003	CDS	82970221	82970240	+
GWHAAZE00000003	CDS	82970568	82970743	+
GWHAAZE00000003	CDS	82970864	82971020	+
GWHAAZE00000003	CDS	82971152	82971210	+

Transcript Sequence
>GWHTAAZE012298 TAGCCAAATAGACACCGAAAAGGAAGAACAAGAAGAAGATCATTCAAAATGAGTACCATGAAATTTTGCCGGGAGTGCAACAACATTCTCTACCCTAAAGAGGACAAGGAGCAGAAGATTCTTCTTTATGCTTGCCGAAATTGCGACCACCAGAATCAACTAGTTCAAGTAGTTGATGGTTTAACTAGGTTCATCTGGAAGGAACGTAACGCTAGATTATTCAAGGATCATTTCTCGGAAGAATCAGAAGATTGCTGCAAGATTAAATTGGGATGCGGTTATGAAGAAGAAGTGCTGTCCTCGGATATTGTTCATAGTAATAGCCCCTGCGCTTGGGAGAGTTTTGAATGTGGGGTTCTTAACATTATACAGGAAGTTGCAGAGAACAATTGCGTATACAGAAATGAGATACACCACCCTGTGGGAGAGCGCACACAAGTCCTGCAGGATGTAGCAGCCGATCCAACTCTCCCTCGCACAAAGTCAGTCCATTGCGCTCAATGCAACCATGGCGAAGCTGTTTTCTTCCAGGCGACAGCAAGGGGAGAAGAAGGTATGACGCTGTTCTTTGTTTGTTGCAACCCCAACTGCGGCTACCGGTGGAGGGACTGAGAGAGAGAGAGAGAAGTTGCACTTGAAAAGGCGGTTAAATGTGAGAGCATGTTGACGAGTATTGACTCTTATCCCTTTGAAAGGCTTCTCAGAATCATTTCATGTATTGCGTTTGTTTCTCAATCTAGGTTATGA

Network for GWHGAAZE012284

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02150.17	RNA_POL_M_15KD	4	33	1.20E-11
PF01096.19	TFIIS_C	148	186	1.00E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03017	RPB9, POLR2I	RNA polymerase	map03020

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0006379	biological_process	mRNA cleavage
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.245
	SRR3591706	second leaf	15.403
	SRR3591707	mature leaf	12.464
	SRR3591708	Shoot apex	45.042
	SRR3591709	Stem	19.965
	SRR3591710	White floral bud	21.118
	SRR3591711	White flower	30.365
	SRR3591712	Green floral bud	24.573
	SRR3591713	Yellow flower	25.398
SRP173429	SRR8316895	Juvenile bud stage	23.742
	SRR8316896	Juvenile bud stage	32.694
	SRR8316897	Juvenile bud stage	16.266
	SRR8316894	Third green stage	12.411
	SRR8316900	Third green stage	34.489
	SRR8316901	Third green stage	32.834
	SRR8316898	Complete white stage	10.104
	SRR8316899	Complete white stage	34.513
	SRR8316903	Complete white stage	14.574
	SRR8316902	Silver flowering stage	11.575
	SRR8316904	Silver flowering stage	10.907
	SRR8316905	Silver flowering stage	5.650
	SRR8316906	Gold flowering stage	25.672
	SRR8316907	Gold flowering stage	24.957
	SRR8316908	Gold flowering stage	25.730
SRP132670	SRR6706286	Control	32.141
	SRR6706287	Light intensity 50%	29.796
	SRR6706288	Light intensity 20%	34.640
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	52.222
	CNS0095593	Slightly white alabastrum(diploid) 2	44.663
	CNS0095594	Slightly white alabastrum(diploid) 3	52.214
	CNS0095595	Whole white alabastrum(diploid) 2	31.836
	CNS0095596	Whole white alabastrum(diploid) 3	31.546
	CNS0095597	Whole white alabastrum(diploid) 4	30.931
	CNS0095598	Silvery flower (diploied) 1	29.567
	CNS0095599	Silvery flower (diploied) 2	31.604
	CNS0095600	Silvery flower (diploied) 3	22.427
	CNS0095601	Golden flower (diploid) 1	24.673
	CNS0095602	Golden flower (diploid) 2	19.038
	CNS0095603	Golden flower (diploid) 3	17.210
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.421
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.759
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.402
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.286
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.838
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.807
	CNS0095610	Silvery flower (tetraploid) 1	25.980
	CNS0095611	Silvery flower (tetraploid) 2	17.614
	CNS0095612	Silvery flower (tetraploid) 3	17.039
	CNS0095613	Golden flower (tetraploid) 1	21.610
	CNS0095614	Golden flower (tetraploid) 2	20.913
	CNS0095615	Golden flower (tetraploid) 3	9.431
CRA001975	CRR073297	Stem 1	26.935
	CRR073298	Stem 2	28.450
	CRR073299	Stem 3	33.254
	CRR073300	Leaf 1	24.037
	CRR073301	Leaf 2	27.435
	CRR073302	Leaf 3	27.067
	CRR073303	Juvenile bud 1	26.536
	CRR073304	Juvenile bud 2	23.679
	CRR073305	Juvenile bud 3	17.296
	CRR073306	Third green 1	5.528
	CRR073307	Third green 2	8.035
	CRR073308	Third green 3	8.059
	CRR073309	Second white 1	5.357
	CRR073310	Second white 2	8.680
	CRR073311	Second white 3	5.143
	CRR073312	Silver flowering 1	5.495
	CRR073313	Silver flowering 2	5.672
	CRR073314	Silver flowering 3	3.401
	CRR073315	Gold flowering 1	22.131
	CRR073316	Gold flowering 2	19.551
	CRR073317	Gold flowering 3	8.599
	CRR073318	Tawny withering 1	26.815
	CRR073319	Tawny withering 2	26.783
	CRR073320	Tawny withering 3	23.210