Gene detail

Detail information of GWHGAAZE012282

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010063155.1	0	PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like [Eucalyptus grandis]
trEMBL	tr\|A0A059DBL9\|A0A059DBL9_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW87947.1}
TAIR10	AT3G06670.2	3E-123	binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82941175	82957682	+
GWHAAZE00000003	mRNA	82941175	82957682	+
GWHAAZE00000003	exon	82941175	82941199	+
GWHAAZE00000003	exon	82942488	82942552	+
GWHAAZE00000003	exon	82942674	82942742	+
GWHAAZE00000003	exon	82942824	82942901	+
GWHAAZE00000003	exon	82942979	82943125	+
GWHAAZE00000003	exon	82944882	82945019	+
GWHAAZE00000003	exon	82946024	82946139	+
GWHAAZE00000003	exon	82947298	82947375	+
GWHAAZE00000003	exon	82947470	82947563	+
GWHAAZE00000003	exon	82948864	82948959	+
GWHAAZE00000003	exon	82954319	82954536	+
GWHAAZE00000003	exon	82954629	82954743	+
GWHAAZE00000003	exon	82955512	82955643	+
GWHAAZE00000003	exon	82955719	82955826	+
GWHAAZE00000003	exon	82955909	82956018	+
GWHAAZE00000003	exon	82956377	82956478	+
GWHAAZE00000003	exon	82956934	82957682	+
GWHAAZE00000003	CDS	82941175	82941199	+
GWHAAZE00000003	CDS	82942488	82942552	+
GWHAAZE00000003	CDS	82942674	82942742	+
GWHAAZE00000003	CDS	82942824	82942901	+
GWHAAZE00000003	CDS	82942979	82943125	+
GWHAAZE00000003	CDS	82944882	82945019	+
GWHAAZE00000003	CDS	82946024	82946139	+
GWHAAZE00000003	CDS	82947298	82947375	+
GWHAAZE00000003	CDS	82947470	82947563	+
GWHAAZE00000003	CDS	82948864	82948959	+
GWHAAZE00000003	CDS	82954319	82954536	+
GWHAAZE00000003	CDS	82954629	82954743	+
GWHAAZE00000003	CDS	82955512	82955643	+
GWHAAZE00000003	CDS	82955719	82955826	+
GWHAAZE00000003	CDS	82955909	82956018	+
GWHAAZE00000003	CDS	82956377	82956478	+
GWHAAZE00000003	CDS	82956934	82957456	+
GWHAAZE00000003	three_prime_UTR	82957457	82957682	+

Transcript Sequence
>GWHTAAZE012296 ATGGATGTCATCGGCTCCCTTGAATATGATCCTGAGGTGCCTCGTGTTCATCATCGGAAATTTTTGAAAGAGCATGTGGTGTTTAAGGAGGCCATACCAATTAAAGATCCAGTAGTCCTGTCAAAGATACACCAGACATACAGGGTTGGTTATATAAAGGATGTCCTTCTGTCTAGAGTAATGGATGATGCCACAGCTGCAAGTCTGAATTCCATATTTCATTCAAATAATGCAACAGTTGTTTCTTTGTTAAAAGAGGATAAAACCTTTATCCAGGAATTGTTTGCGAGGTTGAAATCTTCCAACACTTCTACAGAGTCAAAGAAAAATTTGGTAATTGTTGTTTCTTGCATAGCCCTAATTTGCTTGTGTTTCTTTCTCTTGAATGATGTCGCGTTTTTTGGCTGGGCGCGTGAGCTCGAGGTCCCCGAAGTGAGAGCAACGCTAGGGCAGCTTGCCACAGAAATTGAGAAGAGGAAAAGCGGCCTTGTAGAACTAGAACAGATGGGAGGAGAGAGTATTTTTGAGCAAGAGCTTGCCGGTGGTCCAGCAAATTCGCTTATTGAGGTATACTTCACAAATGTTGCTTGCTTTGCTGACTGCTGCTTTGTTTCTTGTGTGCATGGTTTAAAGATGCGGGAGCTTGTTACCGAAGGCATCTTTGATATCATTGCTGATATTTTGCAGAGTGAAGATAAAAAGCTTGTACTAACTGGGACAGACATCTTCATTCTTTTTCTGAATCAGGATCCTAGCACTATGCGTTCACATGTCAGCGGGCAGCCTGGTCTCTCTCTTCTTGGACTTTTGGTGAAAGGCATGATAACAGATTTTGGTGATGATATGCATTGCCAATTTCTTGAAATTCTTCGCAGTCTGTTGGATTCGTTTGCATCAGGGTCCCAGAGAGATCCTATAATTGAGACTTTCTATGAGAAGCACTTGGGTCAATTAATTGATGTTATAACATCATCGTGCCCTCCAAATGATGCTGCTCTACCTGTCAGTGAATCTGCAGGCTCTAGTGGATATACTGGAATTCAAAATAGTGCAAGACCTGAAATACTTTTGAACATCTGTGATCTCCTAAGCTTTTGTGTCATGCACCATCCTTATAGGATAAAGTGTAACTTTCTTCTTAATAATGTGATAGATAAAGTTCTATATCTGACTCGAAGAAAGGAAAAGTACCTTGTAGTTGCAGCTGTTCGATTTGTACGAACTCTTATATCCCGCAATGATGAGCATCTAAACAATCACATTGTGAAGAACAACCTTTTGAAACCAGTTGTAGATGTTTTTGCTAGTAATGGAGATCGTTATAATCTGTTGAACTCTGCAGTTCTGGAACTCTTTGAATATATCCGCAAGGAGAACTTGAAGATATTACTCAAATATTTAGTTGATACATTCTGGGATCAATTGGTCAAATTTGAGAATTTACCCTCCATCCAATCTTTGAAAGTTAGATATGAGCAATCTTTGGAGAGTTCTGGAATGAAAAACGCCCCTTCTATGTTGGACTCTAGAAGGCGAATAGATGAGCGTGCTTTGGAGAAAGAGGAAGAAGATTACTTCAATGAGGACAGTGACGAAGAAGATTCATCAACTGCATCGATGTCACGTACCAAACGAGTACGCACTCAGCCATCTTTATTAAATGGTTCTACTGCAAGCCACTCATCTATAAGTCCAAAATCCGGTGGACTCGTTGACTATGACGACGACGATGATGAAGACTACAAACCACCACCCAGGAAACAGTTTGAGAAATCCGATGAAGATGAGGCGACATTGGAAGCCTTTAGGTTGAAACGAAAATTCCCCTCAAAGGAAGAACCCGAGCTAGTAAAGAGGCAGCGGTTGGTTAAACACTTGAAGGCAAAAGATGGCGTATTTGCTGCACTGCGCTCAACATTAAGTCAAGCGGTTCTACCCAACAAGAAAGCAGCAAGTGCGACGAATATTATTTCTCGGTCCTCGGACCAAAACAAGAGTGCCGATGAGGGGAATCAAGAAGAGAAGGGACCTGTAAGCTGTTCTGATAGTAGTAGTTCAGATGAGGAAAATCATGCACCAGATAAGGAAGCTTCTGCTTCCAGAAGCTGCTCAGATAGCTTGCAAGAAAATAGACAGATGAGTGGCGGAGATGACTGTCCATTGATACCATCGCCGCCTAAGGCCTCACCAGAGATGGCTGTAAATGGTTCTTGACCTAGTTCATATATTAGCGTTCTTGCTCCGTTACATTCAACATTTGTGCTACCAAAAGCAGCTTTCTTCAGCAAAGTTGGACTAAAAACCAAATATATTGAACAAGGATCCTTAAAGACTTGCTGCAGACGCTGTTAGAAGACACTGTACAGTACCATTGAAAAACGCGACTGGGAATTCAGTCTACTTCTCGCTGTTGCCTTTCTAAGTGTTTACGACGCTTTGA

Network for GWHGAAZE012282

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04802.16	SMK-1	1	116	5.10E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17491	SMEK, PPP4R3	Glucagon signaling pathway	map04922
K17491	SMEK, PPP4R3	Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.112
	SRR3591706	second leaf	13.592
	SRR3591707	mature leaf	17.268
	SRR3591708	Shoot apex	16.624
	SRR3591709	Stem	22.049
	SRR3591710	White floral bud	23.140
	SRR3591711	White flower	28.945
	SRR3591712	Green floral bud	18.926
	SRR3591713	Yellow flower	26.874
SRP173429	SRR8316895	Juvenile bud stage	10.223
	SRR8316896	Juvenile bud stage	14.982
	SRR8316897	Juvenile bud stage	7.482
	SRR8316894	Third green stage	6.524
	SRR8316900	Third green stage	16.154
	SRR8316901	Third green stage	15.945
	SRR8316898	Complete white stage	6.082
	SRR8316899	Complete white stage	22.287
	SRR8316903	Complete white stage	12.755
	SRR8316902	Silver flowering stage	9.300
	SRR8316904	Silver flowering stage	15.279
	SRR8316905	Silver flowering stage	6.441
	SRR8316906	Gold flowering stage	20.966
	SRR8316907	Gold flowering stage	17.701
	SRR8316908	Gold flowering stage	25.446
SRP132670	SRR6706286	Control	11.580
	SRR6706287	Light intensity 50%	11.568
	SRR6706288	Light intensity 20%	12.433
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.388
	CNS0095593	Slightly white alabastrum(diploid) 2	9.616
	CNS0095594	Slightly white alabastrum(diploid) 3	8.909
	CNS0095595	Whole white alabastrum(diploid) 2	12.424
	CNS0095596	Whole white alabastrum(diploid) 3	8.883
	CNS0095597	Whole white alabastrum(diploid) 4	11.585
	CNS0095598	Silvery flower (diploied) 1	13.999
	CNS0095599	Silvery flower (diploied) 2	11.281
	CNS0095600	Silvery flower (diploied) 3	21.536
	CNS0095601	Golden flower (diploid) 1	13.510
	CNS0095602	Golden flower (diploid) 2	24.946
	CNS0095603	Golden flower (diploid) 3	23.258
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.201
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.240
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.163
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.750
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.197
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.470
	CNS0095610	Silvery flower (tetraploid) 1	19.855
	CNS0095611	Silvery flower (tetraploid) 2	22.101
	CNS0095612	Silvery flower (tetraploid) 3	19.408
	CNS0095613	Golden flower (tetraploid) 1	13.702
	CNS0095614	Golden flower (tetraploid) 2	18.875
	CNS0095615	Golden flower (tetraploid) 3	27.615
CRA001975	CRR073297	Stem 1	15.656
	CRR073298	Stem 2	16.108
	CRR073299	Stem 3	11.496
	CRR073300	Leaf 1	15.890
	CRR073301	Leaf 2	14.091
	CRR073302	Leaf 3	10.608
	CRR073303	Juvenile bud 1	12.359
	CRR073304	Juvenile bud 2	7.087
	CRR073305	Juvenile bud 3	12.305
	CRR073306	Third green 1	6.578
	CRR073307	Third green 2	4.492
	CRR073308	Third green 3	6.987
	CRR073309	Second white 1	7.490
	CRR073310	Second white 2	11.614
	CRR073311	Second white 3	10.121
	CRR073312	Silver flowering 1	9.904
	CRR073313	Silver flowering 2	5.562
	CRR073314	Silver flowering 3	6.335
	CRR073315	Gold flowering 1	7.838
	CRR073316	Gold flowering 2	11.690
	CRR073317	Gold flowering 3	5.250
	CRR073318	Tawny withering 1	12.044
	CRR073319	Tawny withering 2	16.204
	CRR073320	Tawny withering 3	12.101