Gene detail

Detail information of GWHGAAZE012255

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010649570.1	PREDICTED: phospholipase D p1 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9LRZ5\|PLDP1_ARATH	Phospholipase D p1
trEMBL	tr\|F6H6X5\|F6H6X5_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48017.1}
TAIR10	AT3G05630.1	phospholipase D P2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82576814	82590065	+
GWHAAZE00000003	mRNA	82576814	82590065	+
GWHAAZE00000003	exon	82576814	82576831	+
GWHAAZE00000003	exon	82577083	82577325	+
GWHAAZE00000003	exon	82577434	82577550	+
GWHAAZE00000003	exon	82579109	82579248	+
GWHAAZE00000003	exon	82579364	82579510	+
GWHAAZE00000003	exon	82580106	82580262	+
GWHAAZE00000003	exon	82580357	82580869	+
GWHAAZE00000003	exon	82581889	82581999	+
GWHAAZE00000003	exon	82583480	82583533	+
GWHAAZE00000003	exon	82584642	82584788	+
GWHAAZE00000003	exon	82584858	82584887	+
GWHAAZE00000003	exon	82586437	82586538	+
GWHAAZE00000003	exon	82588603	82588734	+
GWHAAZE00000003	exon	82588826	82588891	+
GWHAAZE00000003	exon	82589670	82589731	+
GWHAAZE00000003	exon	82589816	82590065	+
GWHAAZE00000003	CDS	82576814	82576831	+
GWHAAZE00000003	CDS	82577083	82577325	+
GWHAAZE00000003	CDS	82577434	82577550	+
GWHAAZE00000003	CDS	82579109	82579248	+
GWHAAZE00000003	CDS	82579364	82579510	+
GWHAAZE00000003	CDS	82580106	82580262	+
GWHAAZE00000003	CDS	82580357	82580869	+
GWHAAZE00000003	CDS	82581889	82581999	+
GWHAAZE00000003	CDS	82583480	82583533	+
GWHAAZE00000003	CDS	82584642	82584788	+
GWHAAZE00000003	CDS	82584858	82584887	+
GWHAAZE00000003	CDS	82586437	82586538	+
GWHAAZE00000003	CDS	82588603	82588734	+
GWHAAZE00000003	CDS	82588826	82588891	+
GWHAAZE00000003	CDS	82589670	82589731	+
GWHAAZE00000003	CDS	82589816	82590065	+

Transcript Sequence
>GWHTAAZE012269 ATGAGGTTTTGGGTTCAGGTCTCCTCGGGGAATCAGAGTATAATGCTAAGAACTAAGAGTAGCGCTAAAGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGCCTTCGGCCTTCCGAGGGATGGTGTCACCCTCACCGTTTTGGCTCCTTTGCTCCTCTGCGGGGTTTGACCGAAGACGGCAGTCAGGCTCAGTGGTTTATTGATGGTCGGGCGGCATTTGATGCTATTGCTTTGGGAATCGAAGAGGCAAAATCAGAGATTTTTATGTGTGGCTGGTGGGTTTGCCCAGAACTGTATCTGCGACGTCCTTTCCATGCTCGTGCATCGTCCCGTCTTGATGCTTTGCTGGAAGCAAAAGCTAAGCAAGGTGTTCAGATATACATTCTACTATACAAAGAGGTTGCTCTTGCTCTCAAAATTAACAGTGTTTATAGTAAGAGAAAGCTTCTTGAAATTCATGAGAACGTCAGAGTCCTGAGATATCCGGACCATTTCTCAAGTGGTGTTTACCTATGGTCTCACCATGAAAAGCTTGTCATCATTGATCACCAAATCTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGACTCATTTGAACACAAAGTGGGTGATTACCCCTTAATATGGCCCGGAAAGGACTACTATAACCCAAGGGAATCAGAACCAAATTCTTGGGAGGATACAATGAAGGACGAGCTAGACCGTAACAAATATCCGCGTATGCCATGGCATGATGTCCATTGTGCTCTCTGGGGACCGCCTTGTCGGGATGTTGCTCGGCACTTTGTCCAACGATGGAACTACGCAAAGAGAAATAAAGCTGCAAATGAGCAAGCGATTCCATTACTAATGCCTCAGCAGCATATGGTTATACCACATTACATGGGAAGCAGCAGGGAAACAGCAGTTGGAAGTAAGAACGTTGGAGAAAATTGTAAAGATTTTAAAAGACAGGGTTCTTTGTCTTCTCAGTCGTCTTTTCAAGATATCCCTTTGCTTATGCCTCAAGAAGCCGAGGGGCATGATGGTTCTATTGGTGAGCCAAAATTAAATGGATTGGGTAAGCAAAGTAGGGCCCACAGACCTCCTCCTTTCCCTTTCGGCAAATCCAAAATCGAACCTTTAGTTTCAGATGTGGCAATGGGAGGATTTGTTGATGACCTTGATACCTTAAATTTTCGGCGGGATTTGTCTTCAGATGTGGTGCAGCCCAGCATGAACACTTCGAATAAAGAGTGGTGGGAAATACAAGAGCGAGGCAATCAAGTTGTTTCTTCTGACGAAACTGGTCAAGTTGGTCCATGCGTTCAATGTCGCTGTCAGGTTATAAGGAGTGTCAGTCAATGGTCTGCTGGAACGAGCCAAGTGGAAGAGAGCATTCACAAGGCTTACTGTTCTCTTATTGAAAAAGCAGAACACTTCATCTATATTGAGGTGCCGGCATACAGCCGACCCTGGGATTATGGGGTCCTTAGACCAAATCTCAAGAATCAGTTCTTCATCTCAGGTCTTTCAGGGGATGAACATGTAAGGAACCGCGTGTTAGAAGCATTGTATGCACGTATAAAGCGAGCACATACTGAAAAGAAGTGTTTCAGGGTTATTATCGTCATACCACTCCTTCCTGGCTTTCAGGGAGGTGTAGATGATGGTGGTGCTGCAGCTGTGTATGTGCATAGCAAGGTCATGATAGTTGATGACAATACAGCCTTGATTGGATCAGCTAATATCAATGACAGAAGTTTGCTTGGATCAAGAGATTCTGAGATTGATGTTCTTATGGAAGATGAAGAATTTGTTGATTCATGTATGGGAGGCAAACCACGTAAGGCTGGAAAATTTGCTTCAAGCCTTCGGCTTTCACTATGGTCAGAGCACCTTGGTCTTCACCCCAGAGAGATTGGCCAAATAAAGGACCCAATAATTGATTCAACCTACAAAGATATATGGATGGCGACTGCAAAGACAAATACCATGATCTACCACGATGTCTTCTCTTGCATCCCCAGCGATCTTATACACTCTAGATCGTCGTTGAGACAATGCATGGTGCATTGGAAGGCAAAACTTGGGCACACTACCATTGATCTAGGCGTAGCCCCAAAGAAGCTAGAATCATATCAAAATGGAAATACAAAGGAAACCGAGCCCATGGAGAGATTAGACTTGGTGAAGGGGCATTTGGTTTGTTTTCCTTTGGATTTTATGTGCCAAGAAGATTTAAGACCTGGGTTCAAGGAGAGCGAGTATTATGCATCACCTCATGTTTTTCACTGA

Network for GWHGAAZE012255

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00614.23	PLDc	171	198	5.40E-10
PF13091.7	PLDc_2	470	605	1.00E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Parathyroid hormone synthesis, secretion and action	map04928
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name
GO:0006654	biological_process	phosphatidic acid biosynthetic process
GO:0048017	biological_process	inositol lipid-mediated signaling
GO:0003824	molecular_function	catalytic activity
GO:0004630	molecular_function	phospholipase D activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.776
	SRR3591706	second leaf	5.541
	SRR3591707	mature leaf	3.384
	SRR3591708	Shoot apex	11.022
	SRR3591709	Stem	5.528
	SRR3591710	White floral bud	5.457
	SRR3591711	White flower	4.202
	SRR3591712	Green floral bud	6.986
	SRR3591713	Yellow flower	1.204
SRP173429	SRR8316895	Juvenile bud stage	0.949
	SRR8316896	Juvenile bud stage	2.107
	SRR8316897	Juvenile bud stage	1.450
	SRR8316894	Third green stage	1.152
	SRR8316900	Third green stage	2.365
	SRR8316901	Third green stage	2.812
	SRR8316898	Complete white stage	0.162
	SRR8316899	Complete white stage	0.910
	SRR8316903	Complete white stage	0.392
	SRR8316902	Silver flowering stage	0.314
	SRR8316904	Silver flowering stage	0.549
	SRR8316905	Silver flowering stage	0.233
	SRR8316906	Gold flowering stage	0.963
	SRR8316907	Gold flowering stage	0.527
	SRR8316908	Gold flowering stage	0.420
SRP132670	SRR6706286	Control	1.265
	SRR6706287	Light intensity 50%	1.365
	SRR6706288	Light intensity 20%	1.441
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.613
	CNS0095593	Slightly white alabastrum(diploid) 2	1.471
	CNS0095594	Slightly white alabastrum(diploid) 3	1.569
	CNS0095595	Whole white alabastrum(diploid) 2	2.014
	CNS0095596	Whole white alabastrum(diploid) 3	1.808
	CNS0095597	Whole white alabastrum(diploid) 4	1.424
	CNS0095598	Silvery flower (diploied) 1	0.658
	CNS0095599	Silvery flower (diploied) 2	0.493
	CNS0095600	Silvery flower (diploied) 3	0.469
	CNS0095601	Golden flower (diploid) 1	0.463
	CNS0095602	Golden flower (diploid) 2	0.502
	CNS0095603	Golden flower (diploid) 3	0.310
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.963
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.701
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.054
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.827
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.221
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.987
	CNS0095610	Silvery flower (tetraploid) 1	0.404
	CNS0095611	Silvery flower (tetraploid) 2	0.234
	CNS0095612	Silvery flower (tetraploid) 3	0.449
	CNS0095613	Golden flower (tetraploid) 1	0.492
	CNS0095614	Golden flower (tetraploid) 2	0.123
	CNS0095615	Golden flower (tetraploid) 3	0.206
CRA001975	CRR073297	Stem 1	1.511
	CRR073298	Stem 2	1.913
	CRR073299	Stem 3	0.590
	CRR073300	Leaf 1	1.701
	CRR073301	Leaf 2	1.972
	CRR073302	Leaf 3	0.222
	CRR073303	Juvenile bud 1	0.399
	CRR073304	Juvenile bud 2	0.127
	CRR073305	Juvenile bud 3	0.209
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.015
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.040
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.234
	CRR073316	Gold flowering 2	0.156
	CRR073317	Gold flowering 3	0.010
	CRR073318	Tawny withering 1	0.218
	CRR073319	Tawny withering 2	0.580
	CRR073320	Tawny withering 3	0.500