Gene detail

Detail information of GWHGAAZE012252

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAX68525.1	3.44975E-69	putative ethylene responsive element binding protein 2 [Gossypium hirsutum]
Swissprot	tr\|P42736\|RAP23_ARATH	4E-56	Ethylene-responsive transcription factor RAP2-3
trEMBL	tr\|Q56E95\|Q56E95_GOSHI	1E-69	Putative ethylene responsive element binding protein 2 {ECO:0000313\|EMBL:AAX68525.1}
TAIR10	AT3G16770.1	8E-36	ethylene-responsive element binding protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82543942	82545678	+
GWHAAZE00000003	mRNA	82543942	82545678	+
GWHAAZE00000003	exon	82543942	82544162	+
GWHAAZE00000003	exon	82544812	82545678	+
GWHAAZE00000003	five_prime_UTR	82543942	82543993	+
GWHAAZE00000003	CDS	82543994	82544162	+
GWHAAZE00000003	CDS	82544812	82545413	+
GWHAAZE00000003	three_prime_UTR	82545414	82545678	+

Transcript Sequence
>GWHTAAZE012266 TTCTTTTTTAAAAAAAGCTCTATCTCTCTCTAGAACTAATTAGAACATCAAGATGTGTGGAGGTGCAATAATATCCGATTTACTCCCGGAATATGATTGCCGGAAAGTGACGACACATGATCTGTGGTCCGAACTCGACACCATCACCGATCTCTTTGGGTGGGACCCCTCCTCCATTCTCAAGAACTCGACTACTCAAAAGCCCATTCAACTCAAAGAAGAGCCAGTTGAGATCAAGAGTGAGAATCAGAGCAAGAAGGCGAGTGGCGGGTCAGCTCAGAGGACCCGGAAGAACATATACAGAGGGATCCGACAGAGGCCTTGGGGCAAATGGGCGGCCGAGATCCGTGACCCACGAAAAGGGGTCCGAGTCTGGCTCGGAACCTTCAGCACGGCTGAAGAGGCGGCTCGAGCCTACGACAAGGCAGCTAAGCGCATTAGAGGCGATAAAGCCAAGCTTAATTTCCCTCAGCCTCAGCCACAGCCACCCCAAACGCCCCCACTAGTGCCTCCTGCCAAAAGGCTGTGTGTCAACCCCGAGTCGGCTTGGTCAAGCTCAAACTTGATCGAGCCCACTCAGTTTTTGGGCATGGGACCCAAAAGACAGTGTGTGGATCCCGAGTCAACCCAATTGATGGGCTTTGGGGTTGAAAGCCCTGTGGAAAGCGAGTCTTCTGAGTTTAAAGAACAGATGTCTAGCTTGGAGTCGTTTCTGGGGTTGGAGCCCGAGTCGAGTCAGTTTGGTGGCGTGGGTGGGTCTGGTGACCCGATTGACCTGTGGATGATTGATGATCCGGCGAGTGCTCAAAATCTGATCTACTAAAGGAAGATTAAAGATGTGGCTCATGGGTTGTTGGCCAATATCTATCTTGATATTTATATATATAGAGAGAGACTTGTTATATGAGTAGTGTTGTGGTTGTTCTTTATGTTTAATGTGTTGTGCTTTTGATCTTTTATTTTATGGATTTAAGTTTAAGAGACTTATTACTTATGCTCTATGGCAGATGGTGTATATACGACAATAAGTTGTGTGTTGATGCCTGAAGTTGGTTGTTTGTTTATTTCCTAAATATTGAAGAGTATTG

Network for GWHGAAZE012252

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	83	131	2.20E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.678
	SRR3591706	second leaf	9.725
	SRR3591707	mature leaf	14.537
	SRR3591708	Shoot apex	44.882
	SRR3591709	Stem	120.451
	SRR3591710	White floral bud	70.988
	SRR3591711	White flower	91.746
	SRR3591712	Green floral bud	32.107
	SRR3591713	Yellow flower	39.864
SRP173429	SRR8316895	Juvenile bud stage	44.190
	SRR8316896	Juvenile bud stage	48.655
	SRR8316897	Juvenile bud stage	18.501
	SRR8316894	Third green stage	18.805
	SRR8316900	Third green stage	21.759
	SRR8316901	Third green stage	21.751
	SRR8316898	Complete white stage	4.195
	SRR8316899	Complete white stage	112.479
	SRR8316903	Complete white stage	27.455
	SRR8316902	Silver flowering stage	6.135
	SRR8316904	Silver flowering stage	8.683
	SRR8316905	Silver flowering stage	6.962
	SRR8316906	Gold flowering stage	23.939
	SRR8316907	Gold flowering stage	44.316
	SRR8316908	Gold flowering stage	35.442
SRP132670	SRR6706286	Control	40.916
	SRR6706287	Light intensity 50%	33.977
	SRR6706288	Light intensity 20%	32.536
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	105.841
	CNS0095593	Slightly white alabastrum(diploid) 2	96.158
	CNS0095594	Slightly white alabastrum(diploid) 3	91.287
	CNS0095595	Whole white alabastrum(diploid) 2	127.452
	CNS0095596	Whole white alabastrum(diploid) 3	34.748
	CNS0095597	Whole white alabastrum(diploid) 4	79.292
	CNS0095598	Silvery flower (diploied) 1	211.564
	CNS0095599	Silvery flower (diploied) 2	198.744
	CNS0095600	Silvery flower (diploied) 3	65.294
	CNS0095601	Golden flower (diploid) 1	331.635
	CNS0095602	Golden flower (diploid) 2	237.731
	CNS0095603	Golden flower (diploid) 3	238.726
	CNS0095604	Slightly white alabastrum(tetraploid) 1	67.170
	CNS0095605	Slightly white alabastrum(tetraploid) 2	66.623
	CNS0095606	Slightly white alabastrum(tetraploid) 3	104.359
	CNS0095607	Whole white alabastrum(tetraploid) 1	61.242
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.416
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.295
	CNS0095610	Silvery flower (tetraploid) 1	25.946
	CNS0095611	Silvery flower (tetraploid) 2	62.734
	CNS0095612	Silvery flower (tetraploid) 3	25.611
	CNS0095613	Golden flower (tetraploid) 1	68.318
	CNS0095614	Golden flower (tetraploid) 2	47.680
	CNS0095615	Golden flower (tetraploid) 3	13.146
CRA001975	CRR073297	Stem 1	71.141
	CRR073298	Stem 2	63.392
	CRR073299	Stem 3	144.585
	CRR073300	Leaf 1	36.635
	CRR073301	Leaf 2	38.294
	CRR073302	Leaf 3	76.540
	CRR073303	Juvenile bud 1	68.216
	CRR073304	Juvenile bud 2	33.882
	CRR073305	Juvenile bud 3	70.714
	CRR073306	Third green 1	1.701
	CRR073307	Third green 2	3.475
	CRR073308	Third green 3	4.424
	CRR073309	Second white 1	14.890
	CRR073310	Second white 2	4.613
	CRR073311	Second white 3	5.254
	CRR073312	Silver flowering 1	14.010
	CRR073313	Silver flowering 2	41.684
	CRR073314	Silver flowering 3	52.687
	CRR073315	Gold flowering 1	20.116
	CRR073316	Gold flowering 2	17.263
	CRR073317	Gold flowering 3	27.610
	CRR073318	Tawny withering 1	298.209
	CRR073319	Tawny withering 2	338.552
	CRR073320	Tawny withering 3	311.092