Gene detail

Detail information of GWHGAAZE012226

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002271765.1	PREDICTED: kinesin-13A [Vitis vinifera]
Swissprot	tr\|Q940B8\|KIN13_ARATH	Kinesin-13A
trEMBL	tr\|D7T6C8\|D7T6C8_VITVI	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}
TAIR10	AT3G16630.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82014255	82022954	-
GWHAAZE00000003	mRNA	82014255	82022954	-
GWHAAZE00000003	exon	82022739	82022954	-
GWHAAZE00000003	exon	82021994	82022215	-
GWHAAZE00000003	exon	82021860	82021892	-
GWHAAZE00000003	exon	82019739	82019843	-
GWHAAZE00000003	exon	82019474	82019551	-
GWHAAZE00000003	exon	82018586	82018667	-
GWHAAZE00000003	exon	82018139	82018301	-
GWHAAZE00000003	exon	82017217	82017546	-
GWHAAZE00000003	exon	82016457	82016675	-
GWHAAZE00000003	exon	82015224	82015794	-
GWHAAZE00000003	exon	82015073	82015135	-
GWHAAZE00000003	exon	82014255	82014437	-
GWHAAZE00000003	CDS	82022739	82022954	-
GWHAAZE00000003	CDS	82021994	82022215	-
GWHAAZE00000003	CDS	82021860	82021892	-
GWHAAZE00000003	CDS	82019739	82019843	-
GWHAAZE00000003	CDS	82019474	82019551	-
GWHAAZE00000003	CDS	82018586	82018667	-
GWHAAZE00000003	CDS	82018139	82018301	-
GWHAAZE00000003	CDS	82017217	82017546	-
GWHAAZE00000003	CDS	82016457	82016675	-
GWHAAZE00000003	CDS	82015224	82015794	-
GWHAAZE00000003	CDS	82015073	82015135	-
GWHAAZE00000003	CDS	82014255	82014437	-

Transcript Sequence
>GWHTAAZE012240 ATGGGTGGCCAGATGCAACAGAGCAATGCTGCTGCAGCAACTGCTCTGTACGATCAACCGGCAGCCACTGGGTCCTTGCTCAGTACAGTTCCCACTAGTGATGCTGGAGACGCCGTTATGACTCGGTGGCTCCAGTCTGCTGGATTGCAGCATCTGGCCTCACCCTTGGCTTCCACTGGCTATGATCATAGACTCCTGCCTAATCTCCTCATGCAGGGTTATGGAGCGGAATCTGCTGAAGAGAAGCAAAGGATTTTCAAATTAATGAGAAACCTCAACTTCGCTGGCGAGTCTGGTTCTGAGGCATACACCCCAACTGTACAAAGTTCAGCAGGGATGGCTGGCATGGGTGTTTTTTATTCTCCTGAAGTTAGAGGGGAATTTGGAGCTGGGCTTTTAGATCTGTATGCTATGGACGACACAGAACTTATATCTGAGTCGCCAGTTTTACAGTGGGAGTTGTTCTCTCATGTGCGTAAAAGACCTCTGAACAAAAAGGAGGTTTCTCGTAAGGAGGAGGACATTGTGACTGCAAGTGACAGTGCTCATTTAACTGTACATGAACCCAAGCTAAAGGTGGACTTGACTGCTTACGTGGAGAAGCATGAGTTCTGTTTTGATGCTGTTCTAAATGAGCATGTAACCAATGATGAGGTATATCGTGCTACGGTGGAGCCAATTATCCCTACCATTTTTCAGCAAACAAAGGCAACTTGTTTTGCTTATGGTCAGACAGGGAGTGGTAAAACGTATACTATGCAACCTTTACCTCTCAGAGCTGCAGGAGACCTTGTTAGATTATTGTATCAGCCAACTTATCGTAACCAGAGACTCAAGTTGTGGCTTAGCTACTTTGAGATCTACGGTGGAAAACTCTACGATCTTCTCAGTGATAGGAAGAAACTTTTTATGAGAGAAGATGGACGCCAACAAGTTTGCATTGTTGGACTGCAAGAATTTGAAGTTTTAGATGTACAGATTGTTAAAGAATACATTGAGAGGGGGAATGCGGCAAGAAGTACGGGGTCTACGGGTGCCAATGAGGAGTCCTCAAGGTCACATGCTATATTACAACTGGTTGTTAAAAAGCCCAAGGAGATAAAAGACTCCAAGCGGAACAGTGATGGAAAAGAGTCCAAGGGTGGGAAGGTTGTGGGTAAAATCTCTTTTATCGATCTAGCTGGTAGTGAAAGAGGTGCCGACACAACTGATAATGACCGACAAACACGGATTGAGGGAGCTGAAATTAACAAGAGTCTTTTAGCTCTCAAGGAGTGTATACGTGCTCTTGACAATGACCAGTTTCATATTCCATTTCGTGGGAGCAAACTGACTGAGGTGCTCCGAGATTCCTTTGTTGGAAACTCAAGAACCGTTATGATCTCTTGCATTTCTCCAAATGCTGGTTCATGTGAACATACACTCAATACTCTCAGATATGCTGACAGGGTTAAGAGTTTGTCAAAAAGTGGAAATCCGAAAAAGGATCTGCTGTCAAGTTCATTGCCACCAATAAATAAAGAAGCCTCATCATCAGCTTCTTTGCCTTTTTCTGCCGATGGCAACAATGTTTATGAACAATATCAAGAAGCTAAAGTAGTAGATTCAGGTAGAAGGGTTACAGAGAAAGAAAGTTTCTCTTACAATTCTACGTCCGAAGTTGAAAAGCAGCATGGTAGTTTTCCTTCAAATTATTCCTCCAACAGCCATGCGAAAAGTGTGGGTTCTAGTGTTATGGAAAAGGAGACGGTTGAAGTGAAAACTAACCTCAGTAGTTCACCAAGTCAAAAGGTTTACTCATCATTTCCCCAAAACTCAGTTGACATGGAAAGAAAGGTGCAAAAGGTTTCTCCACCCCGAAGAAAAGCTTACAAGGATGAAAACTCTGAAAAGGTGGGAAATATGTCAAGTACTAGTCACAAGCGGCAAAGTACAAGCAATGCTAACACAAACAGTATTGGGTCCAGACAATATGAACCAGAACCCACTCCTGGTGACGGTATCAATGAATTACATGAGGAAGAAGCATTGATTGCAGCTCATCGAAGACAAATTGAAGATACAATGGAAATTGTTCGTGAAGAAATGAAACTATTGGCAGATGTGGACCAACCGGGCAGCATGATAGACAACTATGTGAGCCAGTTGAGCTTTGTGCTGTCTCGCAAAGCAGCCAGCCTGGTTAGCCTACAAGCTCGCCTTGCTTGCTTTCAGCATAGACTTAAAGAGCAAGATATACTTGGTAGGGAGAGGGTACCCCGATAA

Network for GWHGAAZE012226

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00225.24	Kinesin	159	486	4.20E-91

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10393	KIF2_24, MCAK	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0007018	biological_process	microtubule-based movement
GO:0003777	molecular_function	microtubule motor activity
GO:0005524	molecular_function	ATP binding
GO:0008017	molecular_function	microtubule binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.455
	SRR3591706	second leaf	4.751
	SRR3591707	mature leaf	4.194
	SRR3591708	Shoot apex	8.307
	SRR3591709	Stem	7.031
	SRR3591710	White floral bud	15.805
	SRR3591711	White flower	29.028
	SRR3591712	Green floral bud	8.182
	SRR3591713	Yellow flower	39.477
SRP173429	SRR8316895	Juvenile bud stage	4.318
	SRR8316896	Juvenile bud stage	6.778
	SRR8316897	Juvenile bud stage	2.881
	SRR8316894	Third green stage	2.546
	SRR8316900	Third green stage	5.631
	SRR8316901	Third green stage	5.331
	SRR8316898	Complete white stage	4.880
	SRR8316899	Complete white stage	7.123
	SRR8316903	Complete white stage	7.946
	SRR8316902	Silver flowering stage	5.764
	SRR8316904	Silver flowering stage	10.833
	SRR8316905	Silver flowering stage	4.893
	SRR8316906	Gold flowering stage	15.041
	SRR8316907	Gold flowering stage	15.995
	SRR8316908	Gold flowering stage	15.434
SRP132670	SRR6706286	Control	3.032
	SRR6706287	Light intensity 50%	2.970
	SRR6706288	Light intensity 20%	3.053
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.711
	CNS0095593	Slightly white alabastrum(diploid) 2	4.465
	CNS0095594	Slightly white alabastrum(diploid) 3	4.276
	CNS0095595	Whole white alabastrum(diploid) 2	3.438
	CNS0095596	Whole white alabastrum(diploid) 3	3.878
	CNS0095597	Whole white alabastrum(diploid) 4	3.559
	CNS0095598	Silvery flower (diploied) 1	6.154
	CNS0095599	Silvery flower (diploied) 2	4.987
	CNS0095600	Silvery flower (diploied) 3	9.148
	CNS0095601	Golden flower (diploid) 1	5.346
	CNS0095602	Golden flower (diploid) 2	8.617
	CNS0095603	Golden flower (diploid) 3	8.362
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.784
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.506
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.128
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.573
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.767
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.171
	CNS0095610	Silvery flower (tetraploid) 1	13.454
	CNS0095611	Silvery flower (tetraploid) 2	10.094
	CNS0095612	Silvery flower (tetraploid) 3	22.899
	CNS0095613	Golden flower (tetraploid) 1	15.789
	CNS0095614	Golden flower (tetraploid) 2	16.032
	CNS0095615	Golden flower (tetraploid) 3	20.217
CRA001975	CRR073297	Stem 1	5.845
	CRR073298	Stem 2	4.983
	CRR073299	Stem 3	3.611
	CRR073300	Leaf 1	4.649
	CRR073301	Leaf 2	3.622
	CRR073302	Leaf 3	2.849
	CRR073303	Juvenile bud 1	2.154
	CRR073304	Juvenile bud 2	2.327
	CRR073305	Juvenile bud 3	3.058
	CRR073306	Third green 1	3.206
	CRR073307	Third green 2	4.030
	CRR073308	Third green 3	4.378
	CRR073309	Second white 1	4.044
	CRR073310	Second white 2	7.306
	CRR073311	Second white 3	7.516
	CRR073312	Silver flowering 1	7.716
	CRR073313	Silver flowering 2	9.723
	CRR073314	Silver flowering 3	9.406
	CRR073315	Gold flowering 1	1.765
	CRR073316	Gold flowering 2	1.611
	CRR073317	Gold flowering 3	0.886
	CRR073318	Tawny withering 1	2.961
	CRR073319	Tawny withering 2	3.794
	CRR073320	Tawny withering 3	3.600