Gene detail

Detail information of GWHGAAZE012224

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI26051.3	1.94677E-66	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q94F30\|ESD4_ARATH	2E-45	Ubiquitin-like-specific protease ESD4
trEMBL	tr\|F6HE59\|F6HE59_VITVI	2E-64	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50311.1}
TAIR10	AT4G15880.1	1E-29	Cysteine proteinases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82008614	82009994	+
GWHAAZE00000003	mRNA	82008614	82009994	+
GWHAAZE00000003	exon	82008614	82008838	+
GWHAAZE00000003	exon	82009015	82009428	+
GWHAAZE00000003	exon	82009521	82009600	+
GWHAAZE00000003	exon	82009688	82009781	+
GWHAAZE00000003	exon	82009887	82009994	+
GWHAAZE00000003	CDS	82008614	82008838	+
GWHAAZE00000003	CDS	82009015	82009428	+
GWHAAZE00000003	CDS	82009521	82009600	+
GWHAAZE00000003	CDS	82009688	82009781	+
GWHAAZE00000003	CDS	82009887	82009994	+

Transcript Sequence
>GWHTAAZE012238 ATGGGTGCCATAACGAATGATTGTAAACATGGGCACAACTACTACGCCATGAATTACAGATCTCCATCTTCATCCTCACCAGATTCAGACTCTCACAATGATTCTCACATTTCGAAAAAAGCCAAATATTCGCCGTCTTTACGCCCTGAATGTTCGTCTTCATCAAAAAGTGCAGCTTCAAAAGTTTCTCGGTACCCTACACCGGTACAGCAGATTCGCAGGGAGGCGATTGGTGTTGAACAAGAGACTGTTAAGGATGATGTTTCCGAGGATTCAAGTGTTGAAGAGGTGGTTGAGCTTGTGGAGGAGAGGAGTGAAGGGCTGCCTAGGGTTTTGGAGCAGAGGTCAAAAGAAACGGATGAGATTTTGGCAAATTTTAAGAAATTAGATGAAAAAGATATGGAGCGTAAATTTCTGCCATCATCTTCCTCAGGGGTTTCGGAATTTTCAAATCTGAAGACAGGCTCAGTGTCGTTGAATGAGGAGTTGGATGTTGTGAGGAGGGTGCCTTTATATATAAAATTGCTTGATTCTGCAAAGAAGTCGGATGAAAAACTGAGCAATTTGAGTCTTCAGATCAAATATCAAGAGAGCATCCGAAGTACTCATCTAATCACTCCGGCAAAGAAAAGGGAGGAGTATTCAGTTAGTGAGCCTTTTGTGCCACTTAGTGATGACGAAGAGGCTGAGGTTGCGCGTGCGTTTTCTAGTCCCAATCGGAGGATGATTCTGGTCACTCATGAAAACTCTAATATTGAGATAACTGTAGAAAAGTTGAGGTGCTTGAGACCTCGTGCATGGTTGAATGATGAGGTTATTAATGTGTACTTGGAGTTGCTGAAAGAGAGGGAAAAGAGGGAGACCCTGAAATATTTGAAATGTCATTTCTTCAGCACATTCTTTTACAAGAAGGTTGGTTGA

Network for GWHGAAZE012224

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02902.20	Peptidase_C48	267	304	6.20E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008234	molecular_function	cysteine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.031
	SRR3591706	second leaf	2.817
	SRR3591707	mature leaf	3.928
	SRR3591708	Shoot apex	5.635
	SRR3591709	Stem	4.580
	SRR3591710	White floral bud	4.649
	SRR3591711	White flower	5.498
	SRR3591712	Green floral bud	4.585
	SRR3591713	Yellow flower	4.241
SRP173429	SRR8316895	Juvenile bud stage	3.390
	SRR8316896	Juvenile bud stage	3.320
	SRR8316897	Juvenile bud stage	0.719
	SRR8316894	Third green stage	2.134
	SRR8316900	Third green stage	6.340
	SRR8316901	Third green stage	4.331
	SRR8316898	Complete white stage	1.645
	SRR8316899	Complete white stage	8.153
	SRR8316903	Complete white stage	3.640
	SRR8316902	Silver flowering stage	1.720
	SRR8316904	Silver flowering stage	3.436
	SRR8316905	Silver flowering stage	1.228
	SRR8316906	Gold flowering stage	4.017
	SRR8316907	Gold flowering stage	3.824
	SRR8316908	Gold flowering stage	2.593
SRP132670	SRR6706286	Control	4.210
	SRR6706287	Light intensity 50%	4.611
	SRR6706288	Light intensity 20%	4.466
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.747
	CNS0095593	Slightly white alabastrum(diploid) 2	3.218
	CNS0095594	Slightly white alabastrum(diploid) 3	0.945
	CNS0095595	Whole white alabastrum(diploid) 2	1.510
	CNS0095596	Whole white alabastrum(diploid) 3	1.174
	CNS0095597	Whole white alabastrum(diploid) 4	2.100
	CNS0095598	Silvery flower (diploied) 1	5.447
	CNS0095599	Silvery flower (diploied) 2	2.409
	CNS0095600	Silvery flower (diploied) 3	4.066
	CNS0095601	Golden flower (diploid) 1	3.560
	CNS0095602	Golden flower (diploid) 2	4.399
	CNS0095603	Golden flower (diploid) 3	3.886
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.393
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.687
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.953
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.846
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.827
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.362
	CNS0095610	Silvery flower (tetraploid) 1	5.791
	CNS0095611	Silvery flower (tetraploid) 2	6.940
	CNS0095612	Silvery flower (tetraploid) 3	3.972
	CNS0095613	Golden flower (tetraploid) 1	2.646
	CNS0095614	Golden flower (tetraploid) 2	3.687
	CNS0095615	Golden flower (tetraploid) 3	4.398
CRA001975	CRR073297	Stem 1	4.210
	CRR073298	Stem 2	4.268
	CRR073299	Stem 3	3.019
	CRR073300	Leaf 1	3.333
	CRR073301	Leaf 2	4.940
	CRR073302	Leaf 3	2.273
	CRR073303	Juvenile bud 1	1.929
	CRR073304	Juvenile bud 2	1.765
	CRR073305	Juvenile bud 3	2.336
	CRR073306	Third green 1	0.514
	CRR073307	Third green 2	0.814
	CRR073308	Third green 3	0.921
	CRR073309	Second white 1	1.271
	CRR073310	Second white 2	0.825
	CRR073311	Second white 3	1.974
	CRR073312	Silver flowering 1	1.727
	CRR073313	Silver flowering 2	1.210
	CRR073314	Silver flowering 3	0.618
	CRR073315	Gold flowering 1	1.340
	CRR073316	Gold flowering 2	1.849
	CRR073317	Gold flowering 3	0.759
	CRR073318	Tawny withering 1	1.149
	CRR073319	Tawny withering 2	2.743
	CRR073320	Tawny withering 3	2.457