Gene detail

Detail information of GWHGAAZE012209

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011071457.1	PREDICTED: cullin-1-like [Sesamum indicum]
Swissprot	tr\|Q94AH6\|CUL1_ARATH	Cullin-1
trEMBL	tr\|A0A022S2Q6\|A0A022S2Q6_ERYGU	Uncharacterized protein {ECO:0000313\|EMBL:EYU45565.1}
TAIR10	AT4G02570.4	cullin 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	81768944	81789476	-
GWHAAZE00000003	mRNA	81768944	81789476	-
GWHAAZE00000003	exon	81768944	81769407	-
GWHAAZE00000003	exon	81775872	81775925	-
GWHAAZE00000003	exon	81776040	81776183	-
GWHAAZE00000003	exon	81776293	81776454	-
GWHAAZE00000003	exon	81777051	81777171	-
GWHAAZE00000003	exon	81777252	81777307	-
GWHAAZE00000003	exon	81777430	81777525	-
GWHAAZE00000003	exon	81777797	81777833	-
GWHAAZE00000003	exon	81784985	81785037	-
GWHAAZE00000003	exon	81785116	81785196	-
GWHAAZE00000003	exon	81785520	81785606	-
GWHAAZE00000003	exon	81785782	81785861	-
GWHAAZE00000003	exon	81785952	81786072	-
GWHAAZE00000003	exon	81786225	81786271	-
GWHAAZE00000003	exon	81786393	81786551	-
GWHAAZE00000003	exon	81787378	81787423	-
GWHAAZE00000003	exon	81787499	81787557	-
GWHAAZE00000003	exon	81789031	81789245	-
GWHAAZE00000003	exon	81789343	81789476	-
GWHAAZE00000003	CDS	81789343	81789476	-
GWHAAZE00000003	CDS	81789031	81789245	-
GWHAAZE00000003	CDS	81787499	81787557	-
GWHAAZE00000003	CDS	81787378	81787423	-
GWHAAZE00000003	CDS	81786393	81786551	-
GWHAAZE00000003	CDS	81786225	81786271	-
GWHAAZE00000003	CDS	81785952	81786072	-
GWHAAZE00000003	CDS	81785782	81785861	-
GWHAAZE00000003	CDS	81785520	81785606	-
GWHAAZE00000003	CDS	81785116	81785196	-
GWHAAZE00000003	CDS	81784985	81785037	-
GWHAAZE00000003	CDS	81777797	81777833	-
GWHAAZE00000003	CDS	81777430	81777525	-
GWHAAZE00000003	CDS	81777252	81777307	-
GWHAAZE00000003	CDS	81777051	81777171	-
GWHAAZE00000003	CDS	81776293	81776454	-
GWHAAZE00000003	CDS	81776040	81776183	-
GWHAAZE00000003	CDS	81775872	81775925	-
GWHAAZE00000003	CDS	81769306	81769407	-
GWHAAZE00000003	three_prime_UTR	81768944	81769305	-

Transcript Sequence
>GWHTAAZE012223 ATGAATGAGCGCAAGACAATCGACTTAGAGCAAGGATGGGACTTTATGCAGAAAGGCATTACAAAGCTAAAGAACATCCTAGAAGGTCTTCCCGAGCCCCAGTTCAGTTCAGAGGACTACATGATGCTCTACACAACCATCTATAACATGTGTACTCAAAAACCTCCCCACGATTACTCTCAGCAGCTTTATGACAAATATCGGGAGGCTTTTGAAGAATACATCACTTCAACGGTAAGGGAGGTTCTATCTTATTTGTTTGTACTGCACTTGCATACATGTTGGCTCTTATCTGTTGTTTCAACATGGTATCCGGACTTGATTATCCTCAATGATAATAGTGTTTGTGTCTCATGCATTAGGTTGGAGGGAAATTGTAGTTGGTGGAGGTTGATTAGGGCTCCAAAGTTTGAATGGTTGGAGAAGGAGAGCATGGGTTTGAAACAGGACACAGGTGGCTTTCGTTTCTTTCACTATCTTGACCGCTACTTTATTGCTCGAAGGTCACTTCCTGGACTAAATGAAGTTGGACTCTCTTGCTTCCGTGATCTGGTATTTCATAATTCCACCCTTACTGCTCTACTTATCTGCATCATGTATTTTGCCTCTAAAAGTCTACCAGGAAATAAATGGGAAAGTAAGGGCTGCGTAATATCTCTGGAATGGGGCAAATGGATTATTACGAGAATGACTTTGAAGCAGAAATGCTCACAGATACAGGGGCCTATTATTCGCGGAAGGCTTCAAGCTGGATTCTGGAAGATTCTTGTCCAGATTACATGCAGAGGAGTGTTTGAAACGGAGGAGAAGGACAGGGTTTCTCATTATCTTCATTTTAGTAGTGAGCCAAAATTGCTTGAGAAAGTTCAAAATCAGTTGCTTTCTGTGTATGCAACCCAATTGCTTGAAGGAGCACTCCGGTGCCATGCACTGCTTAGGGATGACAAGGTGGAGGATTTGTCAAGGATGTATAGGCTATTTTCCAAAATACCTCGAGGCTTAGATCCTGTTTCTAATATATTTAAGCAGCTGAAGGTACAGCCTTGGTTAAACAAGCAGAGGATGCAGCAAGCAACAAGAAGGCAGATAAGAAAGATGTGGTCGGGTTTGCAAGAACAGGCTCTTAAGGAGGCTTTTGAAATCTTCTGCAACAAGGGTGTTGCCGGAAGCTCAAGTGAATTACTCGCCACATTTTGTGATAATATTCTTAAAAAGGTAGTGAAGCTGCTTGCTTACATTAGTGATAAAGACCTATTCGCTGAATTTTACAGGAAAAAGCTTGCTAGGCGGCTTCTGTTTGACAAGAGTGCTAATGATGAACATGAGAGAAGTATTCTGACAAAGCTTAAGCAGCAATGTGGTGGTCAGTTCACCTCAAAGATGGAGGGAATGGTTACAGATTTGACATTGGCGAAGGAAAATCAATCCAACTTCGAAGAGTACCTCAACGGTAATCCACATATAAATCCTGGAATTGACTTGACCGTTACTGTTCTGACTACTGGCTTTTGGCCAAGTTACAAGTCCTTTGATCTCAACCTTCCACTAGAGATGGTCAAATGCGTTGAAGTTTTCTCCGAATTCTACCAAACAAAAACAAAGCACAGGAAACTTACATGGATATATTCATTGGGTACTTGTAACATCAATGGAAAGTTTGATGCCAAAACAACAGAGCTGATTGTGACAACTTACCAGGCTTCTGCTCTGCTGCTATTCAATTCCTCAGATAGATTGAGTTATCAGGAGATTCCGGACGTGAAAGCAATCAAGAAAAGGATCGAAGATTTGATAACACGGGATTATTTGGAAAGAGACAAGGATAACGCCAACTTGTTCAGGTACTTGGCATGAATTTGTGTGCGCAGTTGGTAAAATCCCAATGGAGTTTGTTGGCGGCTGTGGCTGCCCAATACCAGGCCAAGGTGGAGTCGAGGAATGAGGGCACAAACAACAAAGTGTAAATGCTGCCTTGAGAAAATCTTTGTATATTTGCAAGTCAGGTGAGGATAAGATATTATGACCTTTTTTAACTGTCCTTTTGTTGGGGAAAAAAAATCAAAAAACCTTGTATGTTAATCCGTTCTGCTTTCCTTTGTACCAATGGGATTGTCCTCTTGGTATGTGATTTTTATTTTTGGGTCGTGTTTTTTTAGGGCTAAGAAACGACATGAAACTGTTATCGATTTTAAATTAATCATTTTCTAATTCTTTTA

Network for GWHGAAZE012209

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00888.23	Cullin	21	192	1.10E-10
PF00888.23	Cullin	267	343	3.10E-13
PF00888.23	Cullin	371	590	4.20E-71

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0031461	cellular_component	cullin-RING ubiquitin ligase complex
GO:0031625	molecular_function	ubiquitin protein ligase binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.415
	SRR3591706	second leaf	8.186
	SRR3591707	mature leaf	12.855
	SRR3591708	Shoot apex	12.637
	SRR3591709	Stem	18.942
	SRR3591710	White floral bud	15.618
	SRR3591711	White flower	18.941
	SRR3591712	Green floral bud	15.202
	SRR3591713	Yellow flower	18.923
SRP173429	SRR8316895	Juvenile bud stage	7.007
	SRR8316896	Juvenile bud stage	9.554
	SRR8316897	Juvenile bud stage	3.947
	SRR8316894	Third green stage	3.289
	SRR8316900	Third green stage	11.420
	SRR8316901	Third green stage	11.275
	SRR8316898	Complete white stage	5.985
	SRR8316899	Complete white stage	12.958
	SRR8316903	Complete white stage	8.755
	SRR8316902	Silver flowering stage	6.820
	SRR8316904	Silver flowering stage	9.808
	SRR8316905	Silver flowering stage	4.032
	SRR8316906	Gold flowering stage	10.893
	SRR8316907	Gold flowering stage	12.309
	SRR8316908	Gold flowering stage	11.990
SRP132670	SRR6706286	Control	3.704
	SRR6706287	Light intensity 50%	4.249
	SRR6706288	Light intensity 20%	4.210
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.316
	CNS0095593	Slightly white alabastrum(diploid) 2	12.912
	CNS0095594	Slightly white alabastrum(diploid) 3	12.510
	CNS0095595	Whole white alabastrum(diploid) 2	11.365
	CNS0095596	Whole white alabastrum(diploid) 3	10.283
	CNS0095597	Whole white alabastrum(diploid) 4	10.492
	CNS0095598	Silvery flower (diploied) 1	10.811
	CNS0095599	Silvery flower (diploied) 2	11.756
	CNS0095600	Silvery flower (diploied) 3	14.552
	CNS0095601	Golden flower (diploid) 1	9.550
	CNS0095602	Golden flower (diploid) 2	10.653
	CNS0095603	Golden flower (diploid) 3	10.345
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.264
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.395
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.142
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.102
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.244
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.095
	CNS0095610	Silvery flower (tetraploid) 1	14.650
	CNS0095611	Silvery flower (tetraploid) 2	13.032
	CNS0095612	Silvery flower (tetraploid) 3	14.913
	CNS0095613	Golden flower (tetraploid) 1	12.155
	CNS0095614	Golden flower (tetraploid) 2	13.238
	CNS0095615	Golden flower (tetraploid) 3	14.016
CRA001975	CRR073297	Stem 1	8.974
	CRR073298	Stem 2	9.185
	CRR073299	Stem 3	8.507
	CRR073300	Leaf 1	9.030
	CRR073301	Leaf 2	8.368
	CRR073302	Leaf 3	7.023
	CRR073303	Juvenile bud 1	9.508
	CRR073304	Juvenile bud 2	6.147
	CRR073305	Juvenile bud 3	10.012
	CRR073306	Third green 1	5.248
	CRR073307	Third green 2	5.220
	CRR073308	Third green 3	5.206
	CRR073309	Second white 1	6.126
	CRR073310	Second white 2	7.739
	CRR073311	Second white 3	6.840
	CRR073312	Silver flowering 1	4.123
	CRR073313	Silver flowering 2	5.738
	CRR073314	Silver flowering 3	4.791
	CRR073315	Gold flowering 1	5.626
	CRR073316	Gold flowering 2	8.770
	CRR073317	Gold flowering 3	4.090
	CRR073318	Tawny withering 1	8.405
	CRR073319	Tawny withering 2	8.963
	CRR073320	Tawny withering 3	8.879