Gene detail

Detail information of GWHGAAZE012172

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004229198.1	PREDICTED: probable serine/threonine-protein kinase At1g54610 [Solanum lycopersicum]
Swissprot	tr\|Q9ZVM9\|Y1461_ARATH	Probable serine/threonine-protein kinase At1g54610
trEMBL	tr\|M1AQ08\|M1AQ08_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400027661}
TAIR10	AT1G54610.2	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	81199030	81207331	-
GWHAAZE00000003	mRNA	81199030	81207331	-
GWHAAZE00000003	exon	81199030	81199317	-
GWHAAZE00000003	exon	81200350	81200470	-
GWHAAZE00000003	exon	81200995	81201095	-
GWHAAZE00000003	exon	81203031	81203258	-
GWHAAZE00000003	exon	81206132	81206449	-
GWHAAZE00000003	exon	81206552	81206826	-
GWHAAZE00000003	exon	81206917	81207331	-
GWHAAZE00000003	CDS	81206917	81207331	-
GWHAAZE00000003	CDS	81206552	81206826	-
GWHAAZE00000003	CDS	81206132	81206449	-
GWHAAZE00000003	CDS	81203031	81203258	-
GWHAAZE00000003	CDS	81200995	81201095	-
GWHAAZE00000003	CDS	81200350	81200470	-
GWHAAZE00000003	CDS	81199030	81199317	-

Transcript Sequence
>GWHTAAZE012186 ATGGGGTGTGTGTTTGGGAGAGAGATTTCTTCTTCTGGCCCACCTAGTTCTGAGATTGTAGTTGTACAAAAGGGGAGAGAGAGAGATTTGGCTGTTCCTTCTGGTAGGAGAGAGAAAGTTGCGGTCGCGAATGCCAAGGGAGGGGATGCTGCCGCTGGGGACGGTGGTGGTGAGGCTCAGAATGGTGATCAGAAAGAGCAAAAGGAGAGGAGTGCACGCCCGAGGGGTGAGAGAAGACGATCCAAGCCAAATCCGAGGCTAAGTAATCCCCCCAAGAATATACATGGTGAGCAAGTGGCTGCAGGCTGGCCCTCATGGTTATCGGCGGTGGCCGGAGAGGCAATCAGTGGGTGGACACCTCGCAGGGCCGACACTTTTGAGAAAATCGACAAGGCAAGTTTTACTAGCCTAACACGTACATATAGTAATGTGTACAAAGCTAGGGATACTATAACAGGTAAAATTGTGGCATTGAAGAAGGTTCGATTCGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCTAGGGAGATTTTGATTTTGCGGCGCTTGGATCATCCCAATGTTGTGAAATTGGAAGGTTTAGTGACCTCGAGGATGTCTTGTAGTTTGTACCTCGTGTTTGAATATATGGTGCACGATTTGGCTGGACTTGCTGCAAGCCCGGGAATAAAGTTTACAGAGCCTCAGGTCAAGTGTTACATGAACCAGTTATTGTCAGGGCTTGAACATTGCCATAATCGCCATGTTTTGCATCGAGATATTAAGGGCTCAAATCTACTTATTGACAACGGTGGGGTTCTTAAGATTGCTGATTTTGGGTTGGCTTCGTTCTTTGACCCCAATCACAGGCAGCCCATGACTAGTCGGGTGGTTACTCTGTGGTACCGTCCCCCAGAGCTGCTTCTTGGAGCCACTGATTATGGTGTAGGTGTGGACCTTTGGAGCGCTGGTTGCATTTTGGCCGAGTTATTAGCGGGAAAGCCTATCATGCCTGGTCGAACAGAGGTGGAGCAGCTACACAAGATATTCAAGTTATGTGGTTCTCCTTCTGAAGAATATTGGAAAAAGTCTAAGTTGCCGCATGCAACCATATTTAAGCCCCAACAGTCATACAAAAGATGTATAGTAGAGACATTCAAAGATTTTCCGCCTTCATCATTGCCATTAATTGAAACCCTTCTGGCTATTGATCCAGCTGAACGTCTAACTGCTACGGCTGCGTTGAATAGTGAATTCTTCACAACGAAACCTTATGCTTGTGACCCTTCAAGCCTTCCTAAATATCCTCCCAGCAAGGAGATGGATGCTAAACTACGAGATGAAGAAGCACGAAGATTAAGAGCTGCTGGTAAAACCAATGCTGGTGATGGTGTGAAGAAATCTCGTATGCGTGATCGAGCTGTAAGGGCAATGCCTGCTCCAGAAGCCAATGCCGAACTCCAAGCTAATCTTGATCAACCTAGGATTGCTGGGAAAACACTAGGCTGCATCAAAGATTGCTGGAGAACACTTGGCAGCAATATGGGATGCCGGAAAATCCTGGCTGAACCACAAGATTACCAGGAAAACACTCGGCTGCACCTAGAGACGACCGGAAAACACATGGCCACAACACGGGATGCCGGAAAACAATCGGCTGCACCTAGAGACAGCCGGAAAACACTCGGAAGCAATAAAAGAAAAGATGCATATAGACCAATGCGCCATAAACCAAGACCACTTAAGCAAGTGGCATTAAGGTAG

Network for GWHGAAZE012172

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	140	414	2.60E-63

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CRK7-CDK9

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	73.631
	SRR3591706	second leaf	20.854
	SRR3591707	mature leaf	17.461
	SRR3591708	Shoot apex	39.510
	SRR3591709	Stem	66.070
	SRR3591710	White floral bud	20.864
	SRR3591711	White flower	30.365
	SRR3591712	Green floral bud	23.653
	SRR3591713	Yellow flower	16.964
SRP173429	SRR8316895	Juvenile bud stage	20.241
	SRR8316896	Juvenile bud stage	27.473
	SRR8316897	Juvenile bud stage	11.176
	SRR8316894	Third green stage	10.646
	SRR8316900	Third green stage	26.805
	SRR8316901	Third green stage	24.903
	SRR8316898	Complete white stage	11.071
	SRR8316899	Complete white stage	33.213
	SRR8316903	Complete white stage	16.030
	SRR8316902	Silver flowering stage	12.956
	SRR8316904	Silver flowering stage	14.485
	SRR8316905	Silver flowering stage	6.310
	SRR8316906	Gold flowering stage	21.682
	SRR8316907	Gold flowering stage	21.117
	SRR8316908	Gold flowering stage	28.952
SRP132670	SRR6706286	Control	24.987
	SRR6706287	Light intensity 50%	26.567
	SRR6706288	Light intensity 20%	25.100
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.332
	CNS0095593	Slightly white alabastrum(diploid) 2	18.756
	CNS0095594	Slightly white alabastrum(diploid) 3	15.573
	CNS0095595	Whole white alabastrum(diploid) 2	14.309
	CNS0095596	Whole white alabastrum(diploid) 3	10.108
	CNS0095597	Whole white alabastrum(diploid) 4	11.113
	CNS0095598	Silvery flower (diploied) 1	21.260
	CNS0095599	Silvery flower (diploied) 2	23.865
	CNS0095600	Silvery flower (diploied) 3	26.824
	CNS0095601	Golden flower (diploid) 1	20.665
	CNS0095602	Golden flower (diploid) 2	23.906
	CNS0095603	Golden flower (diploid) 3	24.283
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.148
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.527
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.565
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.847
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.382
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.666
	CNS0095610	Silvery flower (tetraploid) 1	31.265
	CNS0095611	Silvery flower (tetraploid) 2	21.949
	CNS0095612	Silvery flower (tetraploid) 3	19.444
	CNS0095613	Golden flower (tetraploid) 1	11.993
	CNS0095614	Golden flower (tetraploid) 2	25.835
	CNS0095615	Golden flower (tetraploid) 3	11.257
CRA001975	CRR073297	Stem 1	40.071
	CRR073298	Stem 2	33.482
	CRR073299	Stem 3	35.204
	CRR073300	Leaf 1	34.978
	CRR073301	Leaf 2	31.247
	CRR073302	Leaf 3	30.519
	CRR073303	Juvenile bud 1	29.299
	CRR073304	Juvenile bud 2	21.086
	CRR073305	Juvenile bud 3	32.565
	CRR073306	Third green 1	19.608
	CRR073307	Third green 2	17.237
	CRR073308	Third green 3	21.212
	CRR073309	Second white 1	13.839
	CRR073310	Second white 2	10.961
	CRR073311	Second white 3	11.653
	CRR073312	Silver flowering 1	10.465
	CRR073313	Silver flowering 2	10.627
	CRR073314	Silver flowering 3	9.455
	CRR073315	Gold flowering 1	14.361
	CRR073316	Gold flowering 2	17.232
	CRR073317	Gold flowering 3	14.228
	CRR073318	Tawny withering 1	59.065
	CRR073319	Tawny withering 2	50.404
	CRR073320	Tawny withering 3	54.569