Detail information of GWHGAAZE012168


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006382702.11.0242E-90Cu/Zn superoxide dismutase family protein [Populus trichocarpa]
Swissprottr|P27082|SODC_NICPL1E-90Superoxide dismutase [Cu-Zn]
trEMBLtr|A9PAB4|A9PAB4_POPTR4E-91Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}
TAIR10AT1G08830.23E-60copper/zinc superoxide dismutase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8116229881163783-
GWHAAZE00000003mRNA8116229881163783-
GWHAAZE00000003exon8116229881162395-
GWHAAZE00000003exon8116260681162681-
GWHAAZE00000003exon8116277481162805-
GWHAAZE00000003exon8116328381163378-
GWHAAZE00000003exon8116351281163613-
GWHAAZE00000003exon8116370881163783-
GWHAAZE00000003CDS8116370881163783-
GWHAAZE00000003CDS8116351281163613-
GWHAAZE00000003CDS8116328381163378-
GWHAAZE00000003CDS8116277481162805-
GWHAAZE00000003CDS8116260681162681-
GWHAAZE00000003CDS8116229881162395-
Transcript Sequence

Network for GWHGAAZE012168

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00080.21Sod_Cu131465.80E-47
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04565SOD1 Peroxisome map04146
Longevity regulating pathway - multiple speciesmap04213

Gene Ontology

GO term OntologyName
GO:0006801biological_processsuperoxide metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0046872molecular_functionmetal ion binding
GO:0004784molecular_functionsuperoxide dismutase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf39.449
SRR3591706second leaf101.116
SRR3591707mature leaf0.946
SRR3591708Shoot apex262.959
SRR3591709Stem17.792
SRR3591710White floral bud55.562
SRR3591711White flower25.149
SRR3591712Green floral bud137.548
SRR3591713Yellow flower12.421
SRP173429 SRR8316895Juvenile bud stage 119.874
SRR8316896Juvenile bud stage 140.792
SRR8316897Juvenile bud stage 81.463
SRR8316894Third green stage 57.861
SRR8316900Third green stage 223.941
SRR8316901Third green stage 215.885
SRR8316898Complete white stage 32.776
SRR8316899Complete white stage 145.614
SRR8316903Complete white stage 48.447
SRR8316902Silver flowering stage63.969
SRR8316904Silver flowering stage52.653
SRR8316905Silver flowering stage37.365
SRR8316906Gold flowering stage 122.883
SRR8316907Gold flowering stage 146.378
SRR8316908Gold flowering stage 85.365
SRP132670SRR6706286Control97.826
SRR6706287Light intensity 50%173.662
SRR6706288Light intensity 20%236.105
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1151.234
CNS0095593Slightly white alabastrum(diploid) 2140.719
CNS0095594Slightly white alabastrum(diploid) 3156.307
CNS0095595Whole white alabastrum(diploid) 2133.617
CNS0095596Whole white alabastrum(diploid) 3127.559
CNS0095597Whole white alabastrum(diploid) 4100.816
CNS0095598Silvery flower (diploied) 197.194
CNS0095599Silvery flower (diploied) 272.952
CNS0095600Silvery flower (diploied) 387.702
CNS0095601Golden flower (diploid) 182.231
CNS0095602Golden flower (diploid) 266.715
CNS0095603Golden flower (diploid) 369.632
CNS0095604Slightly white alabastrum(tetraploid) 1178.181
CNS0095605Slightly white alabastrum(tetraploid) 2136.395
CNS0095606Slightly white alabastrum(tetraploid) 3213.063
CNS0095607Whole white alabastrum(tetraploid) 1111.499
CNS0095608Whole white alabastrum(tetraploid) 285.902
CNS0095609Whole white alabastrum(tetraploid) 3216.308
CNS0095610Silvery flower (tetraploid) 1130.040
CNS0095611Silvery flower (tetraploid) 2193.345
CNS0095612Silvery flower (tetraploid) 3144.654
CNS0095613Golden flower (tetraploid) 164.497
CNS0095614Golden flower (tetraploid) 2101.538
CNS0095615Golden flower (tetraploid) 357.210
CRA001975CRR073297Stem 1223.679
CRR073298Stem 2195.046
CRR073299Stem 3280.509
CRR073300Leaf 1254.850
CRR073301Leaf 2215.081
CRR073302Leaf 3335.950
CRR073303Juvenile bud 1248.798
CRR073304Juvenile bud 2334.228
CRR073305Juvenile bud 3104.763
CRR073306Third green 1267.324
CRR073307Third green 2291.431
CRR073308Third green 3177.074
CRR073309Second white 1199.281
CRR073310Second white 2142.245
CRR073311Second white 391.705
CRR073312Silver flowering 1100.666
CRR073313Silver flowering 2124.251
CRR073314Silver flowering 367.385
CRR073315Gold flowering 112.491
CRR073316Gold flowering 212.359
CRR073317Gold flowering 316.336
CRR073318Tawny withering 1112.130
CRR073319Tawny withering 2111.841
CRR073320Tawny withering 341.600