Gene detail

Detail information of GWHGAAZE012159

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010269034.1	3.2574E-55	PREDICTED: U1 small nuclear ribonucleoprotein C-like [Nelumbo nucifera]
Swissprot	tr\|F6HQ26\|RU1C_VITVI	2E-44	U1 small nuclear ribonucleoprotein C {ECO:0000255\|HAMAP-Rule:MF_03153}
trEMBL	tr\|V4VVV4\|V4VVV4_9ROSI	1E-45	U1 small nuclear ribonucleoprotein C {ECO:0000256\|HAMAP-Rule:MF_03153}
TAIR10	AT4G03120.1	1E-22	C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	81013774	81015968	+
GWHAAZE00000003	mRNA	81013774	81015968	+
GWHAAZE00000003	exon	81013774	81013851	+
GWHAAZE00000003	exon	81013951	81014224	+
GWHAAZE00000003	exon	81015591	81015968	+
GWHAAZE00000003	CDS	81013774	81013851	+
GWHAAZE00000003	CDS	81013951	81014224	+
GWHAAZE00000003	CDS	81015591	81015784	+
GWHAAZE00000003	three_prime_UTR	81015785	81015968	+

Transcript Sequence
>GWHTAAZE012173 TCAATAATTCTAACTGCCATAACATTTTTACTTCAGCCGTCGGTCAGAAAGCAGCACAATGCAGGATACAAACACAAGGCAAATGTACGTGAATATTATCAAAGCTTTGAGCAGCAACAAACACAGATTTTGATTGACCAAAAGATCAAGGAGCATCTAGGGCAGGCAGCAGCATACCGACAAGTTGGTGCTGCATACAATCAACACCTTGCTTCCTTCCCTGGGACTCCTCAGCAGCCCCGCCCACCTGTGTTGCCACCACCAGTTTTGCCAATTTCTGGGGCTGCACCCTCACCTTTGGTCCCAGGTGTTAGGCCTCCTGTTTTTCCAAGACCTATTGTTTCTGTTCCAGGTTATGGAGCCCCTCTGACGATGGTGCCAGTTGCTCCACCATTGAGTGGCCCAACAACAGTCCCTGGGGAAGTGCCAGCCCCTGGTTCTAATGCTGCCCCGTCTGCTTTTACGCAAGCAATGTACCTGGGCAATCCTACTGCTGGAAGTAGTACTACTACGCTCCAGTTCCAGCTCCCGCTCCTGGTACCATAGCCGGCTATACTTATGGCCAAGCCCCGGATCCCACACGTTGATCTTTTACTAGGTGGTTGCCTAAACTTGAGCATTGTGTTGTCTCACTTTGTGCTTTAGAAAGATCTTTCTTTTCCGAATTTGGAAAAGTTGACACCTTTGGTTCGGTAACTGTTTTCTAGAAATGGACAAAATACATTTTCTT

Network for GWHGAAZE012159

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06220.13	zf-U1	12	33	8.80E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11095	SNRPC	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0000387	biological_process	spliceosomal snRNP assembly
GO:0000398	biological_process	mRNA splicing, via spliceosome
GO:0005685	cellular_component	U1 snRNP
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.804
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.933
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.786
	SRR8316896	Juvenile bud stage	1.292
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.238
	SRR8316900	Third green stage	0.692
	SRR8316901	Third green stage	0.664
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.630
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.196
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.174
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.885
	SRR6706287	Light intensity 50%	0.898
	SRR6706288	Light intensity 20%	1.105
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.088
	CNS0095593	Slightly white alabastrum(diploid) 2	1.386
	CNS0095594	Slightly white alabastrum(diploid) 3	1.109
	CNS0095595	Whole white alabastrum(diploid) 2	1.921
	CNS0095596	Whole white alabastrum(diploid) 3	1.203
	CNS0095597	Whole white alabastrum(diploid) 4	1.748
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.713
	CNS0095600	Silvery flower (diploied) 3	0.344
	CNS0095601	Golden flower (diploid) 1	0.718
	CNS0095602	Golden flower (diploid) 2	0.707
	CNS0095603	Golden flower (diploid) 3	1.100
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.293
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.347
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.687
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.060
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.894
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.740
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.395
	CNS0095612	Silvery flower (tetraploid) 3	0.214
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.127
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.793
	CRR073298	Stem 2	1.164
	CRR073299	Stem 3	0.820
	CRR073300	Leaf 1	1.895
	CRR073301	Leaf 2	1.285
	CRR073302	Leaf 3	0.735
	CRR073303	Juvenile bud 1	1.334
	CRR073304	Juvenile bud 2	0.783
	CRR073305	Juvenile bud 3	0.675
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.054
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.087
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.072
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.804
	CRR073316	Gold flowering 2	0.510
	CRR073317	Gold flowering 3	0.116
	CRR073318	Tawny withering 1	0.742
	CRR073319	Tawny withering 2	1.057
	CRR073320	Tawny withering 3	0.334