Gene detail

Detail information of GWHGAAZE012133

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010105675.1	2.4096E-125	Prolyl 4-hydroxylase subunit alpha-1 [Morus notabilis]
Swissprot	tr\|Q8LAN3\|P4H4_ARATH	6E-116	Probable prolyl 4-hydroxylase 4 (Precursor)
trEMBL	tr\|W9SGN4\|W9SGN4_9ROSA	9E-126	Prolyl 4-hydroxylase subunit alpha-1 {ECO:0000313\|EMBL:EXC05706.1}
TAIR10	AT5G18900.1	8E-93	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	80693320	80698608	+
GWHAAZE00000003	mRNA	80693320	80698608	+
GWHAAZE00000003	exon	80693320	80693377	+
GWHAAZE00000003	exon	80693879	80694054	+
GWHAAZE00000003	exon	80698008	80698071	+
GWHAAZE00000003	exon	80698174	80698608	+
GWHAAZE00000003	CDS	80693320	80693377	+
GWHAAZE00000003	CDS	80693879	80694054	+
GWHAAZE00000003	CDS	80698008	80698071	+
GWHAAZE00000003	CDS	80698174	80698469	+
GWHAAZE00000003	three_prime_UTR	80698470	80698608	+

Transcript Sequence
>GWHTAAZE012145 GATCCTATTGTTGCCGGTATAGAGGACAAGATCGCTACTTGGACTTTCCTACCCAAAGAAAATGGGGAGGATATTCAAGTTCTAAGATATGAGCCTGGGCAGAAGTATGACCCACACTTCGATTACTTCACCGACAAGGTTAATATTGCAAGAGGGGGACACCGCATAGCTACTGTACTTATGTATTTGACAGATGTTGCAAAGGGTGGTGAGACCGTATTCCCCTCTGCAGAGGAGTCTCCTCGTCATAAGCCTGCTGATGATGACTTATCAGAGTGTGCAAAGAAAGGCATTGCCGTAAAACCACGAAAAGGGGACGCGCTTCTTTTCTTCAGCCTGCTGCCAACTGCAACCCCAGACCCAAACAGTCTCCACGCAGGGTGTCCTGTGATTGAAGGCGAGAAGTGGTCAGCAACAAAGTGGATTCACGTAGATTCCTTTGACAAGATTATGGGAGCGGGTGGCAATTGTACGGACCAGAACGATAATTGTGAGAGATGGGCTTCTCTAGGAGAGTGCACCAAAAATCCCGAGTATATGGTGGGCACTCCCGAACTTCCGGGATACTGCAGGAGGAGCTGTAAGTTGTGTTAGTTTCGATTCTTTAACTCTTTCAGATTTGGGATTTATAAGAATGAGATCTGTTGGATTCGGATTCAGGCAAAGACCGGAATATGCGTGTATAATATAGGGATGTGGATCAGATCTCACAAGATTTTATTTAAATCTGATA

Network for GWHGAAZE012133

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13640.7	2OG-FeII_Oxy_3	25	143	7.80E-22
PF01549.25	ShK	156	197	0.00047

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00472	P4HA	Metabolic pathways	map01100
K00472	P4HA	Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418	molecular_function	L-ascorbic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	58.139
	SRR3591706	second leaf	35.532
	SRR3591707	mature leaf	20.157
	SRR3591708	Shoot apex	42.408
	SRR3591709	Stem	33.302
	SRR3591710	White floral bud	32.829
	SRR3591711	White flower	25.832
	SRR3591712	Green floral bud	49.890
	SRR3591713	Yellow flower	13.764
SRP173429	SRR8316895	Juvenile bud stage	37.595
	SRR8316896	Juvenile bud stage	72.531
	SRR8316897	Juvenile bud stage	30.012
	SRR8316894	Third green stage	24.318
	SRR8316900	Third green stage	74.161
	SRR8316901	Third green stage	73.599
	SRR8316898	Complete white stage	28.261
	SRR8316899	Complete white stage	68.131
	SRR8316903	Complete white stage	39.105
	SRR8316902	Silver flowering stage	18.416
	SRR8316904	Silver flowering stage	21.148
	SRR8316905	Silver flowering stage	11.530
	SRR8316906	Gold flowering stage	29.397
	SRR8316907	Gold flowering stage	26.916
	SRR8316908	Gold flowering stage	33.795
SRP132670	SRR6706286	Control	43.547
	SRR6706287	Light intensity 50%	46.457
	SRR6706288	Light intensity 20%	47.942
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	102.173
	CNS0095593	Slightly white alabastrum(diploid) 2	94.844
	CNS0095594	Slightly white alabastrum(diploid) 3	115.778
	CNS0095595	Whole white alabastrum(diploid) 2	74.966
	CNS0095596	Whole white alabastrum(diploid) 3	86.845
	CNS0095597	Whole white alabastrum(diploid) 4	66.849
	CNS0095598	Silvery flower (diploied) 1	45.151
	CNS0095599	Silvery flower (diploied) 2	42.654
	CNS0095600	Silvery flower (diploied) 3	33.474
	CNS0095601	Golden flower (diploid) 1	34.495
	CNS0095602	Golden flower (diploid) 2	28.527
	CNS0095603	Golden flower (diploid) 3	30.608
	CNS0095604	Slightly white alabastrum(tetraploid) 1	80.919
	CNS0095605	Slightly white alabastrum(tetraploid) 2	93.679
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.779
	CNS0095607	Whole white alabastrum(tetraploid) 1	76.895
	CNS0095608	Whole white alabastrum(tetraploid) 2	57.642
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.715
	CNS0095610	Silvery flower (tetraploid) 1	31.069
	CNS0095611	Silvery flower (tetraploid) 2	24.980
	CNS0095612	Silvery flower (tetraploid) 3	26.685
	CNS0095613	Golden flower (tetraploid) 1	17.679
	CNS0095614	Golden flower (tetraploid) 2	23.550
	CNS0095615	Golden flower (tetraploid) 3	8.131
CRA001975	CRR073297	Stem 1	50.019
	CRR073298	Stem 2	47.980
	CRR073299	Stem 3	52.847
	CRR073300	Leaf 1	50.921
	CRR073301	Leaf 2	59.913
	CRR073302	Leaf 3	52.739
	CRR073303	Juvenile bud 1	53.038
	CRR073304	Juvenile bud 2	45.078
	CRR073305	Juvenile bud 3	47.053
	CRR073306	Third green 1	27.581
	CRR073307	Third green 2	23.027
	CRR073308	Third green 3	21.434
	CRR073309	Second white 1	12.928
	CRR073310	Second white 2	11.184
	CRR073311	Second white 3	6.638
	CRR073312	Silver flowering 1	2.761
	CRR073313	Silver flowering 2	7.663
	CRR073314	Silver flowering 3	4.576
	CRR073315	Gold flowering 1	34.487
	CRR073316	Gold flowering 2	36.905
	CRR073317	Gold flowering 3	32.245
	CRR073318	Tawny withering 1	59.583
	CRR073319	Tawny withering 2	67.347
	CRR073320	Tawny withering 3	58.105