Detail information of GWHGAAZE012118


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010244481.10PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Nelumbo nucifera]
Swissprottr|Q06J54|EFTU_BIGNA2E-20Elongation factor Tu, chloroplastic
trEMBLtr|A5AKA8|A5AKA8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN80178.1}
TAIR10AT1G04170.10eukaryotic translation initiation factor 2 gamma subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8048797480492025-
GWHAAZE00000003mRNA8048797480492025-
GWHAAZE00000003exon8049178780492025-
GWHAAZE00000003exon8049163780491698-
GWHAAZE00000003exon8049117080491282-
GWHAAZE00000003exon8049098580491087-
GWHAAZE00000003exon8049008280490309-
GWHAAZE00000003exon8048962880489846-
GWHAAZE00000003exon8048898080489240-
GWHAAZE00000003exon8048797480488285-
GWHAAZE00000003five_prime_UTR8049201680492025-
GWHAAZE00000003CDS8049178780492015-
GWHAAZE00000003CDS8049163780491698-
GWHAAZE00000003CDS8049117080491282-
GWHAAZE00000003CDS8049098580491087-
GWHAAZE00000003CDS8049008280490309-
GWHAAZE00000003CDS8048962880489846-
GWHAAZE00000003CDS8048898080489240-
GWHAAZE00000003CDS8048797480488285-
Transcript Sequence

Network for GWHGAAZE012118

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00009.28GTP_EFTU732771.10E-24
PF03144.26GTP_EFTU_D23093911.60E-07
PF09173.12eIF2_C4024925.00E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03242EIF2S3 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.529
SRR3591706second leaf4.033
SRR3591707mature leaf5.160
SRR3591708Shoot apex8.735
SRR3591709Stem9.525
SRR3591710White floral bud9.111
SRR3591711White flower12.563
SRR3591712Green floral bud7.079
SRR3591713Yellow flower11.084
SRP173429 SRR8316895Juvenile bud stage 4.136
SRR8316896Juvenile bud stage 7.296
SRR8316897Juvenile bud stage 2.207
SRR8316894Third green stage 3.106
SRR8316900Third green stage 7.435
SRR8316901Third green stage 7.794
SRR8316898Complete white stage 5.195
SRR8316899Complete white stage 11.061
SRR8316903Complete white stage 5.371
SRR8316902Silver flowering stage5.404
SRR8316904Silver flowering stage6.524
SRR8316905Silver flowering stage1.741
SRR8316906Gold flowering stage 7.054
SRR8316907Gold flowering stage 10.209
SRR8316908Gold flowering stage 6.164
SRP132670SRR6706286Control5.288
SRR6706287Light intensity 50%5.153
SRR6706288Light intensity 20%6.145
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.447
CNS0095593Slightly white alabastrum(diploid) 25.298
CNS0095594Slightly white alabastrum(diploid) 37.994
CNS0095595Whole white alabastrum(diploid) 25.637
CNS0095596Whole white alabastrum(diploid) 37.127
CNS0095597Whole white alabastrum(diploid) 45.609
CNS0095598Silvery flower (diploied) 16.085
CNS0095599Silvery flower (diploied) 25.254
CNS0095600Silvery flower (diploied) 37.110
CNS0095601Golden flower (diploid) 13.528
CNS0095602Golden flower (diploid) 25.238
CNS0095603Golden flower (diploid) 34.859
CNS0095604Slightly white alabastrum(tetraploid) 16.427
CNS0095605Slightly white alabastrum(tetraploid) 26.222
CNS0095606Slightly white alabastrum(tetraploid) 38.919
CNS0095607Whole white alabastrum(tetraploid) 14.653
CNS0095608Whole white alabastrum(tetraploid) 22.313
CNS0095609Whole white alabastrum(tetraploid) 36.207
CNS0095610Silvery flower (tetraploid) 19.203
CNS0095611Silvery flower (tetraploid) 26.462
CNS0095612Silvery flower (tetraploid) 310.635
CNS0095613Golden flower (tetraploid) 16.326
CNS0095614Golden flower (tetraploid) 27.267
CNS0095615Golden flower (tetraploid) 36.799
CRA001975CRR073297Stem 14.505
CRR073298Stem 24.338
CRR073299Stem 31.870
CRR073300Leaf 15.989
CRR073301Leaf 24.624
CRR073302Leaf 33.666
CRR073303Juvenile bud 12.105
CRR073304Juvenile bud 22.608
CRR073305Juvenile bud 33.988
CRR073306Third green 11.536
CRR073307Third green 21.662
CRR073308Third green 31.756
CRR073309Second white 11.144
CRR073310Second white 21.809
CRR073311Second white 31.660
CRR073312Silver flowering 11.565
CRR073313Silver flowering 21.164
CRR073314Silver flowering 31.021
CRR073315Gold flowering 11.603
CRR073316Gold flowering 22.308
CRR073317Gold flowering 30.269
CRR073318Tawny withering 13.223
CRR073319Tawny withering 28.436
CRR073320Tawny withering 34.558