Gene detail

Detail information of GWHGAAZE012063

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004241020.1	5.0144E-144	PREDICTED: syntaxin-related protein KNOLLE [Solanum lycopersicum]
Swissprot	tr\|Q42374\|SY111_ARATH	4E-117	Syntaxin-related protein KNOLLE
trEMBL	tr\|K4C663\|K4C663_SOLLC	2E-144	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g053760.2.1}
TAIR10	AT1G08560.1	5E-95	syntaxin of plants 111

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	79447086	79448379	+
GWHAAZE00000003	mRNA	79447086	79448379	+
GWHAAZE00000003	exon	79447086	79447628	+
GWHAAZE00000003	exon	79447903	79448379	+
GWHAAZE00000003	CDS	79447086	79447628	+
GWHAAZE00000003	CDS	79447903	79448232	+
GWHAAZE00000003	three_prime_UTR	79448233	79448379	+

Transcript Sequence
>GWHTAAZE012075 ATGAATGATCTAATGACAAAATCCTTCACCAGCTACGTAGATCTCAAGAAAGAAGCCATGAAAGACCTTGAATCCGGTCACGACCACACCGTAGAAATCCCGATGGGCCCGACAGCCAATAACCTCACTGCGTTCCTTGAGGAAGCCGAGAGGGTCAAATCCGACACCGATTCAATCCGTGAAACCCTCAACCGGCTCATCGAGGCGAACGAGCAGATCAAGTCTCTCCACAGCCCGGAATCCCTAAAATCGATGCGAAAAAAGATCAATGGGGATATATTGTCGGTCTTGAAGCGGGCGAAAGGGGTGAAGACGCGGCTGGAGGAGATGGAGAGGTGGAACGCGGAGAGCAGGCGGTTGTCTGGGTGCAGGGAGGGGACTCCGGTGGACCGGACGAGAAGCGCGGTGAGTAATGGGCTGAGGAAGAGGATGAAGGAGGTGATGATGGAGTTTCAAGGGCTGAGGCAGAAGATGATGGGGGAGTATAAAGAGAGCATTGGGAGGCAGTACTTTACGGTTACTGGGGAGTACCCTGATGATGAGGAACACGGGAGAGGGAAGGTGTTAGAGACGGTAGTAGAGATACAGGACAGGCATGACGCGGCCAAGGAGATAGAGAAGAGTTTGTTGGAGCTCCACCAGGTGTTCTTGGACATGGCAGTGATGGTGGAGGCTCAGGGCGAGCAAATGGACGATATCCACCACCATGTCATCAATGCCGCCCACTATGTTAACGACGGCACCAAGAACCTCAAGACTGCCAAAGGGTACCAGAAGAGCAGCAGGAGGTGCATGTGCATTGGCATCATTCTTCTCCTTGTCCTCATTCTTGTGGTCATTCTTCCAATTGCTGTTAGCTTTAGCAGCTCTTGATCCTTCGGCTTTTAATTCTTGCATTCTTTTGAATTTTTGGGGTCTAAATTTAAATGCTTGTATTCTTTTGATTGTTTGCTTTCACTCTCGTGAGATATGTATGTATGGTTATGGTGAATGTAAGTTGTGGTTTGAGCTGTCCTTTGT

Network for GWHGAAZE012063

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00804.26	Syntaxin	42	182	4.20E-36
PF05739.20	SNARE	228	280	2.60E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08486	STX1B_2_3	SNARE interactions in vesicular transport	map04130
K08486	STX1B_2_3	Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0016020	cellular_component	membrane
GO:0005484	molecular_function	SNAP receptor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.187
	SRR3591706	second leaf	11.929
	SRR3591707	mature leaf	0.980
	SRR3591708	Shoot apex	113.597
	SRR3591709	Stem	15.790
	SRR3591710	White floral bud	1.899
	SRR3591711	White flower	1.122
	SRR3591712	Green floral bud	3.624
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	25.670
	SRR8316896	Juvenile bud stage	22.110
	SRR8316897	Juvenile bud stage	11.748
	SRR8316894	Third green stage	7.117
	SRR8316900	Third green stage	5.836
	SRR8316901	Third green stage	7.502
	SRR8316898	Complete white stage	0.333
	SRR8316899	Complete white stage	3.639
	SRR8316903	Complete white stage	1.122
	SRR8316902	Silver flowering stage	0.510
	SRR8316904	Silver flowering stage	0.344
	SRR8316905	Silver flowering stage	0.347
	SRR8316906	Gold flowering stage	0.305
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.337
SRP132670	SRR6706286	Control	9.684
	SRR6706287	Light intensity 50%	9.514
	SRR6706288	Light intensity 20%	13.184
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.616
	CNS0095593	Slightly white alabastrum(diploid) 2	18.026
	CNS0095594	Slightly white alabastrum(diploid) 3	13.003
	CNS0095595	Whole white alabastrum(diploid) 2	6.322
	CNS0095596	Whole white alabastrum(diploid) 3	2.992
	CNS0095597	Whole white alabastrum(diploid) 4	6.360
	CNS0095598	Silvery flower (diploied) 1	16.336
	CNS0095599	Silvery flower (diploied) 2	12.420
	CNS0095600	Silvery flower (diploied) 3	3.025
	CNS0095601	Golden flower (diploid) 1	6.152
	CNS0095602	Golden flower (diploid) 2	4.630
	CNS0095603	Golden flower (diploid) 3	3.734
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.655
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.179
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.957
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.267
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.151
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.652
	CNS0095610	Silvery flower (tetraploid) 1	0.130
	CNS0095611	Silvery flower (tetraploid) 2	1.065
	CNS0095612	Silvery flower (tetraploid) 3	0.100
	CNS0095613	Golden flower (tetraploid) 1	0.059
	CNS0095614	Golden flower (tetraploid) 2	0.152
	CNS0095615	Golden flower (tetraploid) 3	0.057
CRA001975	CRR073297	Stem 1	20.125
	CRR073298	Stem 2	20.029
	CRR073299	Stem 3	25.226
	CRR073300	Leaf 1	7.723
	CRR073301	Leaf 2	9.207
	CRR073302	Leaf 3	4.545
	CRR073303	Juvenile bud 1	5.047
	CRR073304	Juvenile bud 2	1.975
	CRR073305	Juvenile bud 3	6.260
	CRR073306	Third green 1	1.727
	CRR073307	Third green 2	0.353
	CRR073308	Third green 3	0.970
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.115
	CRR073311	Second white 3	0.104
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.621
	CRR073316	Gold flowering 2	0.243
	CRR073317	Gold flowering 3	2.169
	CRR073318	Tawny withering 1	43.159
	CRR073319	Tawny withering 2	32.958
	CRR073320	Tawny withering 3	44.893