Detail information of GWHGAAZE011998


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006352862.13.48699E-79PREDICTED: uncharacterized protein LOC102599612 [Solanum tuberosum]
trEMBLtr|M1BH72|M1BH72_SOLTU1E-79Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400045164}
TAIR10AT4G17900.11E-59PLATZ transcription factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene7808708478088379-
GWHAAZE00000003mRNA7808708478088379-
GWHAAZE00000003exon7808708478087323-
GWHAAZE00000003exon7808801078088206-
GWHAAZE00000003exon7808833178088379-
GWHAAZE00000003CDS7808833178088379-
GWHAAZE00000003CDS7808801078088206-
GWHAAZE00000003CDS7808708478087323-
Transcript Sequence

Network for GWHGAAZE011998

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04640.15PLATZ841409.20E-20
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPLATZ

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.154
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.478
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.066
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.156
SRR8316901Third green stage 0.354
SRR8316898Complete white stage 0.263
SRR8316899Complete white stage 0.316
SRR8316903Complete white stage 0.385
SRR8316902Silver flowering stage0.486
SRR8316904Silver flowering stage0.279
SRR8316905Silver flowering stage0.071
SRR8316906Gold flowering stage 0.628
SRR8316907Gold flowering stage 0.284
SRR8316908Gold flowering stage 0.302
SRP132670SRR6706286Control0.131
SRR6706287Light intensity 50%0.152
SRR6706288Light intensity 20%0.055
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.181
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.458
CNS0095597Whole white alabastrum(diploid) 40.357
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.166
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.050
CNS0095604Slightly white alabastrum(tetraploid) 10.055
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.190
CNS0095607Whole white alabastrum(tetraploid) 10.255
CNS0095608Whole white alabastrum(tetraploid) 20.557
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.549
CNS0095611Silvery flower (tetraploid) 20.077
CNS0095612Silvery flower (tetraploid) 30.275
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.282
CRA001975CRR073297Stem 10.140
CRR073298Stem 20.323
CRR073299Stem 30.173
CRR073300Leaf 10.397
CRR073301Leaf 20.368
CRR073302Leaf 30.503
CRR073303Juvenile bud 10.090
CRR073304Juvenile bud 20.213
CRR073305Juvenile bud 30.236
CRR073306Third green 10.197
CRR073307Third green 20.082
CRR073308Third green 30.155
CRR073309Second white 10.082
CRR073310Second white 20.619
CRR073311Second white 30.153
CRR073312Silver flowering 10.250
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.469
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.108
CRR073317Gold flowering 30.029
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.220
CRR073320Tawny withering 30.147