Detail information of GWHGAAZE011901


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO99003.11.9795E-127unnamed protein product [Coffea canephora]
Swissprottr|Q8L4B2|NFYC9_ARATH5E-86Nuclear transcription factor Y subunit C-9
trEMBLtr|A0A068TUH8|A0A068TUH8_COFCA7E-128Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313|EMBL:CDO99003.1}
TAIR10AT1G08970.41E-64nuclear factor Y, subunit C9

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene7507877375079474+
GWHAAZE00000003mRNA7507877375079474+
GWHAAZE00000003exon7507877375079474+
GWHAAZE00000003CDS7507877375079474+
Transcript Sequence

Network for GWHGAAZE011901

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00808.24CBFD_NFYB_HMF771404.70E-18
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YC

KEGG pathway

KO Enzyme pathway mapID
K08066NFYC, HAP5 Antigen processing and presentation map04612

Gene Ontology

GO term OntologyName
GO:0046982molecular_functionprotein heterodimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf99.770
SRR3591706second leaf44.210
SRR3591707mature leaf47.537
SRR3591708Shoot apex88.948
SRR3591709Stem116.385
SRR3591710White floral bud667.031
SRR3591711White flower652.187
SRR3591712Green floral bud116.561
SRR3591713Yellow flower438.786
SRP173429 SRR8316895Juvenile bud stage 68.992
SRR8316896Juvenile bud stage 91.930
SRR8316897Juvenile bud stage 38.428
SRR8316894Third green stage 38.840
SRR8316900Third green stage 127.567
SRR8316901Third green stage 123.451
SRR8316898Complete white stage 365.937
SRR8316899Complete white stage 224.962
SRR8316903Complete white stage 495.792
SRR8316902Silver flowering stage441.538
SRR8316904Silver flowering stage603.717
SRR8316905Silver flowering stage357.261
SRR8316906Gold flowering stage 676.199
SRR8316907Gold flowering stage 876.515
SRR8316908Gold flowering stage 682.039
SRP132670SRR6706286Control220.407
SRR6706287Light intensity 50%238.144
SRR6706288Light intensity 20%220.990
CNP0000432CNS0095592Slightly white alabastrum(diploid) 179.317
CNS0095593Slightly white alabastrum(diploid) 285.470
CNS0095594Slightly white alabastrum(diploid) 377.234
CNS0095595Whole white alabastrum(diploid) 269.889
CNS0095596Whole white alabastrum(diploid) 364.744
CNS0095597Whole white alabastrum(diploid) 467.887
CNS0095598Silvery flower (diploied) 1236.392
CNS0095599Silvery flower (diploied) 2240.980
CNS0095600Silvery flower (diploied) 3692.597
CNS0095601Golden flower (diploid) 1154.660
CNS0095602Golden flower (diploid) 2357.533
CNS0095603Golden flower (diploid) 3343.631
CNS0095604Slightly white alabastrum(tetraploid) 174.102
CNS0095605Slightly white alabastrum(tetraploid) 263.502
CNS0095606Slightly white alabastrum(tetraploid) 3107.739
CNS0095607Whole white alabastrum(tetraploid) 151.810
CNS0095608Whole white alabastrum(tetraploid) 242.433
CNS0095609Whole white alabastrum(tetraploid) 378.242
CNS0095610Silvery flower (tetraploid) 1367.725
CNS0095611Silvery flower (tetraploid) 2437.473
CNS0095612Silvery flower (tetraploid) 31059.006
CNS0095613Golden flower (tetraploid) 1362.330
CNS0095614Golden flower (tetraploid) 2280.810
CNS0095615Golden flower (tetraploid) 3287.954
CRA001975CRR073297Stem 1104.256
CRR073298Stem 296.343
CRR073299Stem 3127.224
CRR073300Leaf 1111.959
CRR073301Leaf 2115.075
CRR073302Leaf 3123.861
CRR073303Juvenile bud 1119.674
CRR073304Juvenile bud 2168.932
CRR073305Juvenile bud 3130.203
CRR073306Third green 1877.117
CRR073307Third green 2999.064
CRR073308Third green 3794.952
CRR073309Second white 11128.450
CRR073310Second white 2766.557
CRR073311Second white 3614.945
CRR073312Silver flowering 1814.082
CRR073313Silver flowering 21112.726
CRR073314Silver flowering 3859.446
CRR073315Gold flowering 157.806
CRR073316Gold flowering 258.162
CRR073317Gold flowering 360.282
CRR073318Tawny withering 1125.662
CRR073319Tawny withering 2121.675
CRR073320Tawny withering 3141.567