Gene detail

Detail information of GWHGAAZE011899

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009760410.1	2.52479E-86	PREDICTED: 3-dehydrosphinganine reductase TSC10A-like [Nicotiana sylvestris]
Swissprot	tr\|Q0WRJ2\|TC10A_ARATH	3E-73	3-dehydrosphinganine reductase TSC10A
trEMBL	tr\|M1AUV1\|M1AUV1_SOLTU	2E-86	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400030835}
TAIR10	AT3G06060.1	4E-59	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	75020171	75020767	-
GWHAAZE00000003	mRNA	75020171	75020767	-
GWHAAZE00000003	exon	75020171	75020767	-
GWHAAZE00000003	CDS	75020171	75020767	-

Transcript Sequence
>GWHTAAZE011911 ATGGCGGACTCAACCCTCGCATTCCTCTCTCTCCTCCTCCTTCTCCCTTTCTCTCTCCTCCTCTTCCTCTTCCTAATCATCCGCCCCCGCCCCGCCAAGGTTCCAATCAAGAACCGCCACGTCTTCATCACCGGCGGATCTAGCGGAATCGGCCTAGCCCTAGCTCACAGGGCCGCATCGGAGGGTGCTCGGGTCTCCATCCTCGCTCGGAACCAAAACAAGCTCGACGAAGCCAGGGAGGCGATTAAGCTCTCCACCGGATTAGAGGTCGCCGTTTTCAGCGCCGATGTTAGGGATTATGACGCCGTTAAGCGAGCCGTGGAGGAAGCGGGGGATGTTGATGTGTTGGTGTGTAATCAAGGGGTTTTTGTTCCAGAAGAACTGGGGAGTCAGAATTTGGAGGAGGTGAAGTTTATGATGGATGTGAATGTGATGGGGACTTTTCATTTGATTAAGGCTGCTTTGCCTGGGATGAAGAATCGAGGAGATCGAGGGGCGGGTTCGATTGCGATTATGTCTTCTCAGGCTGGGCAGGTATTTCTCAAGCCTCGTCTTTTTAGCCTCCTCCAAATGCTGACACTGAATATTAAACTTTGA

Network for GWHGAAZE011899

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	40	179	4.30E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04708	KDSR	Metabolic pathways	map01100
K04708	KDSR	Sphingolipid metabolism	map00600

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.061
	SRR3591706	second leaf	5.540
	SRR3591707	mature leaf	6.510
	SRR3591708	Shoot apex	13.448
	SRR3591709	Stem	14.099
	SRR3591710	White floral bud	12.556
	SRR3591711	White flower	14.312
	SRR3591712	Green floral bud	13.049
	SRR3591713	Yellow flower	13.413
SRP173429	SRR8316895	Juvenile bud stage	6.203
	SRR8316896	Juvenile bud stage	9.647
	SRR8316897	Juvenile bud stage	6.018
	SRR8316894	Third green stage	3.356
	SRR8316900	Third green stage	11.323
	SRR8316901	Third green stage	12.819
	SRR8316898	Complete white stage	7.043
	SRR8316899	Complete white stage	15.173
	SRR8316903	Complete white stage	8.806
	SRR8316902	Silver flowering stage	4.123
	SRR8316904	Silver flowering stage	5.460
	SRR8316905	Silver flowering stage	3.359
	SRR8316906	Gold flowering stage	10.761
	SRR8316907	Gold flowering stage	7.369
	SRR8316908	Gold flowering stage	12.469
SRP132670	SRR6706286	Control	22.332
	SRR6706287	Light intensity 50%	22.499
	SRR6706288	Light intensity 20%	23.034
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.206
	CNS0095593	Slightly white alabastrum(diploid) 2	7.397
	CNS0095594	Slightly white alabastrum(diploid) 3	7.309
	CNS0095595	Whole white alabastrum(diploid) 2	6.952
	CNS0095596	Whole white alabastrum(diploid) 3	8.275
	CNS0095597	Whole white alabastrum(diploid) 4	7.157
	CNS0095598	Silvery flower (diploied) 1	4.922
	CNS0095599	Silvery flower (diploied) 2	4.306
	CNS0095600	Silvery flower (diploied) 3	9.157
	CNS0095601	Golden flower (diploid) 1	3.185
	CNS0095602	Golden flower (diploid) 2	7.251
	CNS0095603	Golden flower (diploid) 3	7.420
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.574
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.425
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.189
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.817
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.689
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.644
	CNS0095610	Silvery flower (tetraploid) 1	14.890
	CNS0095611	Silvery flower (tetraploid) 2	11.902
	CNS0095612	Silvery flower (tetraploid) 3	9.690
	CNS0095613	Golden flower (tetraploid) 1	6.588
	CNS0095614	Golden flower (tetraploid) 2	10.290
	CNS0095615	Golden flower (tetraploid) 3	9.646
CRA001975	CRR073297	Stem 1	14.698
	CRR073298	Stem 2	13.054
	CRR073299	Stem 3	12.387
	CRR073300	Leaf 1	16.934
	CRR073301	Leaf 2	15.862
	CRR073302	Leaf 3	15.096
	CRR073303	Juvenile bud 1	14.495
	CRR073304	Juvenile bud 2	16.197
	CRR073305	Juvenile bud 3	19.893
	CRR073306	Third green 1	8.900
	CRR073307	Third green 2	13.600
	CRR073308	Third green 3	7.954
	CRR073309	Second white 1	7.269
	CRR073310	Second white 2	4.710
	CRR073311	Second white 3	3.683
	CRR073312	Silver flowering 1	4.821
	CRR073313	Silver flowering 2	4.888
	CRR073314	Silver flowering 3	6.571
	CRR073315	Gold flowering 1	2.534
	CRR073316	Gold flowering 2	4.718
	CRR073317	Gold flowering 3	4.408
	CRR073318	Tawny withering 1	10.484
	CRR073319	Tawny withering 2	5.844
	CRR073320	Tawny withering 3	8.499