Gene detail

Detail information of GWHGAAZE011898

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354974.1	0	PREDICTED: receptor-like protein kinase FERONIA-like [Solanum tuberosum]
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	4E-106	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|M1APN7\|M1APN7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400027429}
TAIR10	AT3G51550.1	1E-94	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	75000895	75005812	+
GWHAAZE00000003	mRNA	75000895	75005812	+
GWHAAZE00000003	exon	75000895	75002383	+
GWHAAZE00000003	exon	75003092	75003360	+
GWHAAZE00000003	exon	75003963	75004098	+
GWHAAZE00000003	exon	75004285	75004421	+
GWHAAZE00000003	exon	75004536	75004680	+
GWHAAZE00000003	exon	75005248	75005462	+
GWHAAZE00000003	exon	75005558	75005653	+
GWHAAZE00000003	exon	75005786	75005812	+
GWHAAZE00000003	CDS	75000895	75002383	+
GWHAAZE00000003	CDS	75003092	75003360	+
GWHAAZE00000003	CDS	75003963	75004098	+
GWHAAZE00000003	CDS	75004285	75004421	+
GWHAAZE00000003	CDS	75004536	75004680	+
GWHAAZE00000003	CDS	75005248	75005462	+
GWHAAZE00000003	CDS	75005558	75005653	+
GWHAAZE00000003	CDS	75005786	75005812	+

Transcript Sequence
>GWHTAAZE011910 ATGTTGTATGCTGAACTGCCCGTTTTCACATTTCTTTACTTCTTGTTCTTCCTCCTCCACCATTCAATTATTATCTTTGCTGCCAACTCTCCAAACTCTAATTCTGTTTTTGATATCGATAATACTGCCTTCCTTAGCAATCCCAATTCCGGGTCTTCGATTTCTTGGCCATGGAGATTAGTACTAGCTTTTGGCCGTATAAACACAATTGCAACTGTTATTATAATTTTGATGACTTCATTGAATGTTGTTGTTTATAAGTTGCGGCAAATTCAAGAAGCAAACCTTTACGAGAGACTAAATGATCTGTCGTTATTGCCTTCAGAAAAAGTATGCCGCCGCTTTTCACTGGATGATATTATTTCCGCCACCAATGGCTTTGATGAAGCCTTGGTTATTGGGCGGGGCGGATTTGGCAAGGTCTACAAGGGGGTCATCGATAATGGGACAGTCACTGTTGCTATAAAGCGGTTGGATCCCACGTCCAAGCAGGGTCCCCATGAATTTAGTACCGAGATCAACTTGCTTTCTCGATTTCGACACAGCCACGTCATTTCTCTAATAGGTTATTGCCATAGCTCAGATGAAATGATCCTTGTCTATGAATATATGGTCCGTGGAAGCCTAGCTGATCATTTGTACAAAAGAAGTGGTAAAAACAGTAATACTAGTAATAGTACTAGTCTATCTTGGGTAGAACGCATCAAGATTTGCATTGGGGCTGCACGCGGATTGGACTATCTTCACACCGGTACTGGTGTCAAGAGTAGAGTCATACAGCGCGACGTGAAGAGTGCCAACATCTTATTGGACGAGAATTGGACGGCTAAGATTTCAGACTTTGGGTTAGCTAAGATTGGCCCGGCAAATCAGTCGTGCACGCACGTCAGTACCAATGTTAAAGGCACGTTCGGATATTTGGACCCAGAGTATTTCTTGACCCATAGAGTGACGAGGAAATCTGACGTTTACGCCTTTGGGGTTGTATTGTTAGAAGTGTTATGTGGGAGGCGGGCAGTGGATTCGAAACTCAATTATGAGCAACGGAGTCTTGCTGGATGGGCGCAGAATTGCATTAAAGAAGGATTAGTAGAACAAATTGTTGATCCGTGTTTGAGGGGGCAAATATTGCCGGATTCTACGAAGGTGTTTGTGCAAATTGTGGGCCAATGCTTGCATAGTCATCCAAAAGAACGGCCTACAATGGCCGAGGTTGTCGCTGCACTTGAGTCTTCTTTGGCCTTGCAATTGAAAACAGATTCTTCGGTGCTTGAGTGGGACATTTTTAATAGTGGGCCATTTGGCAATGAAGAGAGTGTGGGTTCTTCTGCGGAACAAGAAGAGGGTATAAATGCTGGTAATGCTGGGGATCAGAATATACAGTTAAGTGAAGCAAGTAGTGAGCAATCTCGTGTGAAGACAAACATGATAACGGCGTTTAGTAGACTGGTGAGATTGTCTCTTTTTGGCACAGATCGTGTCACCTCAGTGAACTCTGCTGCAAAGCTATCAAAGAACAGCAAAACCAACAAAGGCTCTGATCATCAAGTGCCTCCAAATTTTAAATTGTTCACTTATACTGAACTGAAAACGGCCACACGGAACTTCAGTGCAAATTTTCAGTTGGGTGAGGGTAGTTCTCAATCGGATTTCATAGGTTGGATTGATGAGAAATCGTATGAACTGTCGAAGGTCGGAATGGCTGTTGCCATTAAGAAATTTGATCTAGAAGGCTTCGAAGAATTTATAGGATGGCAGCCTGAGCTGGAATTCTTGGGAAAATTTATCCATCCGAATCTTGTTAGTGTGATAGGATGCTGCTTTAAACACAAGGAAGTCTTCCTCGTTTACGAATACCTGCAGAACAGGAGCTTAGAAAGATTCCTTTTCGAAAAAGTTTCAAAACCATTTTCGTGGGATACAAGGCTTAAAATAGCCACCGGAGCAGCTCGAGGCCTTGCTTTCTTGCGCAAAACAGAAAAGCAAATCATTTATCGCTCATTTAGGACTTCCAATATATTACTAGATGGGGATTTTAATGCAAAGCTTTCGAATTTCGAACAAACGAAGTTAGGCCCCATCAACGGCTATACATACATTGATTCATACAATCCAACATCGGTTATCGAAGATATGGAGAACCATGCTTATGTAGCTCCCGAATGCCTAACCAATGGTCATTTGAGTGAGAAGAGCGACGTTTATCGCTTTGGAGTAGTGTTGCTGGAAATAATGGCAGGCCGACGGGCAACTAACGCGATTAGGCCTGGCATTGAGGAAATTTCACTAAACTGGGCGAGGAATCACTTAGAGAGAAAGCTGAAGATAGCAATGGACCCACGTCTGAGAGACGATTACCCTCTCGAAGGAGCATTCCAATTTGCTTCACTTGGTCAAATGAGTAATTCACAAGTACGTTTTATCATAATCATCAGCATTGGCATCCTTCTCTGCTCCACCGGCAGAGTTGAAGCATTGCGCAAACAGGTGGTGACTGGTGATTACAGGTGGTGA

Network for GWHGAAZE011898

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	132	409	1.70E-46
PF07714.18	PK_Tyr_Ser-Thr	543	750	3.30E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.277
	SRR3591706	second leaf	0.213
	SRR3591707	mature leaf	0.523
	SRR3591708	Shoot apex	0.231
	SRR3591709	Stem	0.620
	SRR3591710	White floral bud	0.134
	SRR3591711	White flower	0.490
	SRR3591712	Green floral bud	0.163
	SRR3591713	Yellow flower	0.326
SRP173429	SRR8316895	Juvenile bud stage	0.997
	SRR8316896	Juvenile bud stage	1.189
	SRR8316897	Juvenile bud stage	1.081
	SRR8316894	Third green stage	0.902
	SRR8316900	Third green stage	1.745
	SRR8316901	Third green stage	1.760
	SRR8316898	Complete white stage	0.476
	SRR8316899	Complete white stage	2.241
	SRR8316903	Complete white stage	1.078
	SRR8316902	Silver flowering stage	0.800
	SRR8316904	Silver flowering stage	1.354
	SRR8316905	Silver flowering stage	0.660
	SRR8316906	Gold flowering stage	3.430
	SRR8316907	Gold flowering stage	2.282
	SRR8316908	Gold flowering stage	5.375
SRP132670	SRR6706286	Control	2.475
	SRR6706287	Light intensity 50%	2.799
	SRR6706288	Light intensity 20%	2.373
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.173
	CNS0095593	Slightly white alabastrum(diploid) 2	1.726
	CNS0095594	Slightly white alabastrum(diploid) 3	1.174
	CNS0095595	Whole white alabastrum(diploid) 2	0.822
	CNS0095596	Whole white alabastrum(diploid) 3	0.512
	CNS0095597	Whole white alabastrum(diploid) 4	1.129
	CNS0095598	Silvery flower (diploied) 1	1.750
	CNS0095599	Silvery flower (diploied) 2	1.381
	CNS0095600	Silvery flower (diploied) 3	2.231
	CNS0095601	Golden flower (diploid) 1	2.638
	CNS0095602	Golden flower (diploid) 2	3.468
	CNS0095603	Golden flower (diploid) 3	3.594
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.966
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.642
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.091
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.813
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.278
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.211
	CNS0095610	Silvery flower (tetraploid) 1	3.293
	CNS0095611	Silvery flower (tetraploid) 2	2.581
	CNS0095612	Silvery flower (tetraploid) 3	1.638
	CNS0095613	Golden flower (tetraploid) 1	1.964
	CNS0095614	Golden flower (tetraploid) 2	3.527
	CNS0095615	Golden flower (tetraploid) 3	3.546
CRA001975	CRR073297	Stem 1	1.422
	CRR073298	Stem 2	1.536
	CRR073299	Stem 3	1.079
	CRR073300	Leaf 1	1.646
	CRR073301	Leaf 2	1.117
	CRR073302	Leaf 3	1.962
	CRR073303	Juvenile bud 1	0.751
	CRR073304	Juvenile bud 2	0.890
	CRR073305	Juvenile bud 3	0.771
	CRR073306	Third green 1	0.295
	CRR073307	Third green 2	0.173
	CRR073308	Third green 3	0.378
	CRR073309	Second white 1	0.056
	CRR073310	Second white 2	0.401
	CRR073311	Second white 3	0.299
	CRR073312	Silver flowering 1	0.611
	CRR073313	Silver flowering 2	0.587
	CRR073314	Silver flowering 3	0.200
	CRR073315	Gold flowering 1	2.990
	CRR073316	Gold flowering 2	3.903
	CRR073317	Gold flowering 3	1.417
	CRR073318	Tawny withering 1	3.133
	CRR073319	Tawny withering 2	3.456
	CRR073320	Tawny withering 3	0.928