Gene detail

Detail information of GWHGAAZE011893

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	2.1548E-112	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	5E-104	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	8E-113	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT3G51550.1	2E-92	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74915601	74918204	-
GWHAAZE00000003	mRNA	74915601	74918204	-
GWHAAZE00000003	exon	74915601	74916157	-
GWHAAZE00000003	exon	74917118	74918204	-
GWHAAZE00000003	CDS	74917118	74918204	-
GWHAAZE00000003	CDS	74915601	74916157	-

Transcript Sequence
>GWHTAAZE011905 ATGGCTGTACCGGTAACACCACTGCCGGAGCACATCAACACGCTGCCGTTGCCTTTGCCGGAGCAATTATGCCGTCCCTTCTCCTTTGCCGAGATCTTAGCCGCAACTAACAACTTCGACGATTCATTGGTTATTGGGCAAGGAGGATTTGGTAAAGTATACAAAGGGGTCATCGACAACGGGGCAAGTATCGTTGCTATTAAACGGCTAAGCTCTGCGTCTAATCAAGGAGATTCCGAATTCAGAACCGAGATTGAGATGCTCTCAAAATTTCGGCACTCTCATATTGTGTCTTTAATTGGTTACTGTTATAGTTCCATTGAGATGATCCTTGTCTACGAACATATGGTCAACGGGTCTCTAGCGGATCACTTGCACAAACTTGGCAAGTATGGTACTAGTTCTGATTTATCTTGGGTGCAGCGTCTCAAGATTTGTCTAGGAGCTGCTCGTGGCTTGGATTACCTGCATACAGGTACTGGTGTCATACATCGGGATATAAAGAGTTCGAACATTCTGTTAGATAAGAATTGCGCAGCTAAAGTTTCAGATTTTGGTTTGTCTAGAATCAACCCAATTGATAAGTCTTGCACTCATATCACCACAAATGTAAAAGGGACAACGGGGTATATGGATCCAGAATATATGTTGACCTTCCGATTGACAATGAAATCCGATGTCTACTCTTTTGGGGTTGTACTATTTGAAGTGTTGTGCGGAAGGCGAGCGGTGGATTTTACACTTGATGAAGAGCAATGGAGTCTTGCTAGGTGGGCCCAATGCTGTATTGAAAAAGGAACGCTTCATCGTACTATCAATCCTAATTTGTGGTCGGAAATCTTGCCTGAATCTTTGAAAGAGTTTGTGCGAATTGCAAATCAATGCTTATGTTATCGGCCGAAAAAACGACCTACAATGACTCAGGTCGTGAGCTCACTCGAGTTGGCGTTGGCATTGCAGCTAGGACACAAAGATTCTTCTGCATTTGAAATGGAAATTATTTGTACAACTGAGGCAGATGAAATCATAGAAAATGCTGACTCAACAATGGTACAAGAAGAAAGGCAATCGTTTACGTTCTCGTCTGATTCTCCTCATTTTCCACCAGTTCTTGAAGAGGCTTCCTCCTCTTCCGAGCCTACAGATGATGGTCCATTACCTGCAATAGAGGGCCTCCAAATTTCTGGTGAACCTTTTCCGGGACGGGAGCTACAAGCAAGCGGGTATTCTATTAATGGAACAACAAGTTGTAACTTTAACTGGGTGCGCCATTCGGAAGATGGCTCTGTTAAGTACATAGATGGGGCAACACAACCAAGCTATCTTGTTACCGCGGATGATGTTGATACAACCCTTGCTGTTGAAGTCCAGCCGATGGATGACAGAAAGCGAAACGGTGAACTTGTAAAGGTCTTTGCCAATGAGGATAGAAAGATCACTTGTGATTCGGAATTGCAAAATCACCTACTAGAGACCCTTTATATCGGCCATGCTACGTATAGGGTAACCATGTCTATGAGATATATCGGGATATGGGAGCCAGCTACTTTGTTGATCAAGCAGGAAGGTTATAGCATCAAGCGTAGTGGACCTAGTGCTGCTATAGTCATTGAGAAATTCTCACCATCCACAATAGTTAAACTT

Network for GWHGAAZE011893

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	44	311	9.80E-52

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.570
	SRR3591706	second leaf	5.477
	SRR3591707	mature leaf	5.430
	SRR3591708	Shoot apex	9.168
	SRR3591709	Stem	19.208
	SRR3591710	White floral bud	9.058
	SRR3591711	White flower	17.217
	SRR3591712	Green floral bud	7.898
	SRR3591713	Yellow flower	12.517
SRP173429	SRR8316895	Juvenile bud stage	16.315
	SRR8316896	Juvenile bud stage	12.262
	SRR8316897	Juvenile bud stage	18.780
	SRR8316894	Third green stage	6.240
	SRR8316900	Third green stage	12.475
	SRR8316901	Third green stage	17.143
	SRR8316898	Complete white stage	3.985
	SRR8316899	Complete white stage	36.702
	SRR8316903	Complete white stage	6.563
	SRR8316902	Silver flowering stage	4.940
	SRR8316904	Silver flowering stage	6.759
	SRR8316905	Silver flowering stage	3.311
	SRR8316906	Gold flowering stage	13.068
	SRR8316907	Gold flowering stage	7.784
	SRR8316908	Gold flowering stage	19.642
SRP132670	SRR6706286	Control	11.594
	SRR6706287	Light intensity 50%	10.240
	SRR6706288	Light intensity 20%	9.918
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.085
	CNS0095593	Slightly white alabastrum(diploid) 2	10.485
	CNS0095594	Slightly white alabastrum(diploid) 3	8.626
	CNS0095595	Whole white alabastrum(diploid) 2	8.026
	CNS0095596	Whole white alabastrum(diploid) 3	3.628
	CNS0095597	Whole white alabastrum(diploid) 4	9.681
	CNS0095598	Silvery flower (diploied) 1	20.940
	CNS0095599	Silvery flower (diploied) 2	18.297
	CNS0095600	Silvery flower (diploied) 3	15.349
	CNS0095601	Golden flower (diploid) 1	16.606
	CNS0095602	Golden flower (diploid) 2	26.388
	CNS0095603	Golden flower (diploid) 3	24.259
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.085
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.261
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.061
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.900
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.092
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.295
	CNS0095610	Silvery flower (tetraploid) 1	13.624
	CNS0095611	Silvery flower (tetraploid) 2	14.485
	CNS0095612	Silvery flower (tetraploid) 3	5.331
	CNS0095613	Golden flower (tetraploid) 1	8.079
	CNS0095614	Golden flower (tetraploid) 2	16.608
	CNS0095615	Golden flower (tetraploid) 3	14.474
CRA001975	CRR073297	Stem 1	12.733
	CRR073298	Stem 2	10.620
	CRR073299	Stem 3	10.622
	CRR073300	Leaf 1	19.662
	CRR073301	Leaf 2	22.641
	CRR073302	Leaf 3	13.034
	CRR073303	Juvenile bud 1	14.654
	CRR073304	Juvenile bud 2	11.636
	CRR073305	Juvenile bud 3	22.571
	CRR073306	Third green 1	7.416
	CRR073307	Third green 2	5.519
	CRR073308	Third green 3	6.459
	CRR073309	Second white 1	4.691
	CRR073310	Second white 2	6.400
	CRR073311	Second white 3	8.075
	CRR073312	Silver flowering 1	4.641
	CRR073313	Silver flowering 2	6.961
	CRR073314	Silver flowering 3	2.877
	CRR073315	Gold flowering 1	5.890
	CRR073316	Gold flowering 2	12.947
	CRR073317	Gold flowering 3	11.079
	CRR073318	Tawny withering 1	11.019
	CRR073319	Tawny withering 2	12.867
	CRR073320	Tawny withering 3	12.952