Gene detail

Detail information of GWHGAAZE011891

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007008964.1	2.871E-152	CRINKLY4 related 3, putative [Theobroma cacao]
Swissprot	tr\|Q9LY50\|ACCR3_ARATH	3E-133	Putative serine/threonine-protein kinase-like protein CCR3 (Precursor)
trEMBL	tr\|A0A061FT55\|A0A061FT55_THECC	1E-152	CRINKLY4 related 3, putative {ECO:0000313\|EMBL:EOY17774.1}
TAIR10	AT3G55950.1	9E-117	CRINKLY4 related 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74891768	74894765	-
GWHAAZE00000003	mRNA	74891768	74894765	-
GWHAAZE00000003	exon	74891768	74892825	-
GWHAAZE00000003	exon	74893571	74894765	-
GWHAAZE00000003	CDS	74893571	74894765	-
GWHAAZE00000003	CDS	74891768	74892825	-

Transcript Sequence
>GWHTAAZE011903 ATGATGCCGATACCAGTTCCGCCACTGCCGGAGCACTTAAACAAGCTGCCGTTGGATCCTCCAGAGCCATTTTGCCATTCCTTCTCCCTTGCTGAGATCTTATCCGTGACTCACAACTTTGACGAGTCATTGGTTATCGGGCAGGGCGGATTCGGTAAAGTATACAAAGGGTTCATTGACAACGAGACAAGTGTTGTTGCTGTAAAAAGGCTGAGTTCCACTTCCAAGCAAGGAGATTCTGAATTAAGAACCGAGATTGAAATGCTTTCAAAATTTCGACACACTCATATTGTGTCTCTGATCGGTTATTGTTACAGTTCTACTGAGATGGTACTTGTTTATGAATATATGGTCAACGGGTCTCTAGCGGATCATTTGTACAAAACTAGCAAGTATCGTGATGGTCCTGCTTTATCTTGGGTGCAACGTCTCAAGATTTGTCTAGGAGCTGCTCATGGCTTGGACTACCTCCATACAGGTACCGGTGTCATACATCGCGATGTTAAGAGTTCGAACATCCTGTTAGACAAAAATTGTGCAGCTAAAGTTTCAGACTTCGGGTTGTCTAGAATAAGCCCGATTGATGAGTCATGCACTCATATCAGCACAAATGTTAAAGGGACAACAGGGTACATGGATCCAGAATATCTGTTGACCCTCAAATTGACCATGAAATCCGATGTCTACTCTTTCGGGGTTGTACTATTTGAAGTTTTGTGTGGAAGGCAAGCAGTGGATTTAAGGCTTGATGATGAGCAATGGAGTCTTGCTAGGTGGGCCCAACACTGTATTGATAAAGGAACACTTCATCAGATTATTGATCCTAATTTGAGGTGGGAAATTTTGCCCGAGTCTTATATAGAATTTGCACGAATTGCAAATCAATGCTTATGTTATCAGTCAAAAAAACGTCCTACGATGACTCAGGTTGTGGCGTCACTTGAGTTAGCCCTGGCATTGCAATTAGGACACAAAGATACTTCCGCATTTGAAATGGAGTTAGTTTGTACAAATGAGGAACCTGAAAACGTAGAGAAGGTTGATTCAAAATTGGTGCAAGAAATGGCTATCAAATTTGGGAGTTGTAACGAGGGTAATAAAGATAACCTGCGGTCTCACGTGAAGCCTAGCAAAAGAAAGGCACTCAGAAAAATGTTGCAGCTGCTTATGTTTCGCACAGTTCGCGAGGCACCAGTAGCCCAGCTTCAAGATCCTCCACCAGTTGATGGCAGAACTAGAGAAGGTTCAGGCACCAAATTAAGGAGCGGCACCTCAAAAACACATATAGATAGGCCCGAAGAATTCTTGTTTTCGGACCTTGCTGCGGCCACTAACAATTTCTCCTTGGAGAACAAGATTGGTGTCGGTAGCTTTGGGGAAATGTACAAAGGCAAACTACTAGATGGACGAGAGGTCGCTATTAAAAGGGGAGAGACGGCCAGTTCAAAGACGAAGAAATTTCTTCGAGAGAAAGAGAGCAGCAGCGCGTTTGATTCAGAATTGGCTTCCTTATCTAGGGTTCACCACAAAAACCTGGTTAGGCTAGTTGGGTTTTGCGAATTAGGGTGGTACGAGGAGAGGCTCTTAGTTTATGAATACATGAACAATGATACACTTTACCATCATTTGCACGACAAGAACAACATGGAAAAGAGTAGCAGTCCCTTAAATTCTTGGAAGATGAGGATCAAAATATCATTAGACGCTGCACGTGGCATCGAATACCTGCACAACTACGCAGTTCCTCCTATAATTCATCGAGACATCAAGTCTTCAAATATATTATTGGACGTAAATTGGACTGCAAGAGTATCTGATTTTGGATTATCAATGATATTAATGGGACCAGAAGCTGAACAGAGTGATTATAGTCTGACTAGGGCAGGGACAGTTGGGTACATAGATCCTGAGTACTATATGCGAAATGTGTTGACGGTAAAGAGTGATGTATATAGTCTTGGAGTTGTGTTGCTAGAGCTCTTGACAGGGAAGAGGGCTATATTTAAGAATGATGAAAATGGTGTTCCAACTCGTGTAGTGGATTTTCCAATACCAGCCATTCTAGCCGGAGTGTTGCCCAAGGTTTTGGACCCGAGGGTTGGATCGAAGCTGGAGAAGAATGAAGCAGAGGCAGTAGAGCTAGTTGCTTATACCGCAATTCACTGTGTGAAATTGGCAGGGAGAGAGAGACCTACCATGGCTGACATTGTGGCGAATTTGGATCGAGCGTTGGCTTTATGTGGTGATATATAG

Network for GWHGAAZE011891

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	44	312	1.40E-51
PF00069.26	Pkinase	448	736	1.50E-39

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.651
	SRR3591706	second leaf	0.120
	SRR3591707	mature leaf	0.101
	SRR3591708	Shoot apex	0.134
	SRR3591709	Stem	1.202
	SRR3591710	White floral bud	0.142
	SRR3591711	White flower	0.238
	SRR3591712	Green floral bud	0.114
	SRR3591713	Yellow flower	0.144
SRP173429	SRR8316895	Juvenile bud stage	2.213
	SRR8316896	Juvenile bud stage	1.336
	SRR8316897	Juvenile bud stage	1.410
	SRR8316894	Third green stage	0.857
	SRR8316900	Third green stage	0.557
	SRR8316901	Third green stage	1.167
	SRR8316898	Complete white stage	0.043
	SRR8316899	Complete white stage	4.533
	SRR8316903	Complete white stage	0.253
	SRR8316902	Silver flowering stage	0.079
	SRR8316904	Silver flowering stage	0.273
	SRR8316905	Silver flowering stage	0.037
	SRR8316906	Gold flowering stage	0.429
	SRR8316907	Gold flowering stage	0.286
	SRR8316908	Gold flowering stage	1.024
SRP132670	SRR6706286	Control	0.432
	SRR6706287	Light intensity 50%	0.644
	SRR6706288	Light intensity 20%	0.266
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.059
	CNS0095593	Slightly white alabastrum(diploid) 2	3.298
	CNS0095594	Slightly white alabastrum(diploid) 3	2.751
	CNS0095595	Whole white alabastrum(diploid) 2	1.421
	CNS0095596	Whole white alabastrum(diploid) 3	0.066
	CNS0095597	Whole white alabastrum(diploid) 4	1.956
	CNS0095598	Silvery flower (diploied) 1	6.170
	CNS0095599	Silvery flower (diploied) 2	5.173
	CNS0095600	Silvery flower (diploied) 3	2.165
	CNS0095601	Golden flower (diploid) 1	9.054
	CNS0095602	Golden flower (diploid) 2	3.624
	CNS0095603	Golden flower (diploid) 3	4.452
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.379
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.113
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.345
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.059
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.137
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.168
	CNS0095610	Silvery flower (tetraploid) 1	0.434
	CNS0095611	Silvery flower (tetraploid) 2	0.099
	CNS0095612	Silvery flower (tetraploid) 3	0.408
	CNS0095613	Golden flower (tetraploid) 1	0.301
	CNS0095614	Golden flower (tetraploid) 2	0.291
	CNS0095615	Golden flower (tetraploid) 3	0.147
CRA001975	CRR073297	Stem 1	0.433
	CRR073298	Stem 2	0.393
	CRR073299	Stem 3	0.371
	CRR073300	Leaf 1	0.520
	CRR073301	Leaf 2	0.434
	CRR073302	Leaf 3	0.558
	CRR073303	Juvenile bud 1	0.321
	CRR073304	Juvenile bud 2	0.360
	CRR073305	Juvenile bud 3	0.512
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.021
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.183
	CRR073313	Silver flowering 2	0.082
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.211
	CRR073316	Gold flowering 2	1.595
	CRR073317	Gold flowering 3	0.641
	CRR073318	Tawny withering 1	3.856
	CRR073319	Tawny withering 2	3.778
	CRR073320	Tawny withering 3	4.046