Gene detail

Detail information of GWHGAAZE011890

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099164.1	1.7534E-151	PREDICTED: putative receptor-like protein kinase At5g39000 [Sesamum indicum]
Swissprot	tr\|Q9LY50\|ACCR3_ARATH	1E-130	Putative serine/threonine-protein kinase-like protein CCR3 (Precursor)
trEMBL	tr\|W0TR71\|W0TR71_ACAMN	7E-149	Serine/threonine-protein kinase {ECO:0000313\|EMBL:BAO45865.1}
TAIR10	AT3G55950.1	2E-107	CRINKLY4 related 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74840854	74843879	-
GWHAAZE00000003	mRNA	74840854	74843879	-
GWHAAZE00000003	exon	74840854	74841923	-
GWHAAZE00000003	exon	74842685	74843879	-
GWHAAZE00000003	CDS	74842685	74843879	-
GWHAAZE00000003	CDS	74840854	74841923	-

Transcript Sequence
>GWHTAAZE011902 ATGATGCCGATACCAGTTCCGCCACTGCCGGAGCACTTAAACAAGCTGCCGTTGGATCCGCCGGAGCCATTTTGCCATCCCTTCTCACTTGCTGAGATCTTATCCGGGACTCACAACTTTGACGAGTCATTGGTTATTGGGCAGGGCGGATTCGGTAAGGTATACAAAGGGATCATTGACAACGAGACAAGTGTTGTTGCTGTAAAAAGGCTGAGTTCCACTTCCAAGCAAGGAGATTCTGAATTCAGAACCGAGATTGAAATGCTTTCAAAATTTCGACACACACATATTGTGTCTCTGATCGGTTATTGTTACAGTTCTACTGAGATGGTACTTGTTTATGAATATATGGTCAACGGGTCTCTAGCGGATCATTTGTACAAAACTGGCAAGTATCGTGGTGGTTCTGCTTTATCTTGGGTGCAGCGTCTCAAGATTTGTCTAGGAGCTGCTCGTGGCTTGGATTACCTGCATACAGGTACTGGTGTTATACATCGTGATGTTAAGAGTTCGAACATTCTGTTAGACAAAAATTGTGCAGCGAAAGTTTCAGACTTCGGGTTGTCTAGAATAAGCCCAATTGATGAGTCATGCACTCATATCAGCACAAATGTTAAAGGGACAACAGGGTACATGGATCCAGAATATCTGTTGACCCTCAAATTGACCATGAAATCCGATGTTTACTCTTTCGGGGTTGTACTATTTGAAGTTTTGTGTGGAAGGCAAGCGGTGGATTTAAGGCTTGATGACGAGCAATGGAGTCTTGCTAGGTGGGCCCAACACTGTATTGAAAAAGGAACACTTCATCAGATTATTGATACTAATTTGAGGTGGGAAATTTTGCCCGAGTCTTATACAGAATTTGCACGAATTGCAAATCAATGCTTATGTTATCAGTCGAAAAAACGTCCTACGATGACTCAGGTCGTGGCATCACTCGAGTTAGCCTTGGCATTGCAATTAGGACATAAAGATACTTCTGCATTTGAAATGGAGTTAGTTTGTACAAGTGAGGCACCTGAAAACATAGAGAAGGTTGATTCAAAAATGGTGCAAGAAATGGCTATCAAATTTGGGAGTTGTGATGAGCATAATAAAGATATCCTGCGGTCTCACGTGAAGCCTACCAAAAGAAAGGCACTCAGAAAAATGTTGCAACTGCTCATGTTTCGCACTGTTCGTGAGGCACCAGATGGCAGAACTCGAGAAGGTTCAGGCGCCAAATTAAGGACCAGCACCTCAAAAACACATATAGATAGGCCCGAAGAATTCTTGTTTTCGGACCTTGCTGCGGCCACCAACAATTTCTCCTTGGAGAACAAGATTGGTGCCGGTAGCTTTGGGAAAGTGTACAAAGGCAAACTACTAGATGGACGAGAGGTTGCTATTAAAAGGGGAGAGATGGCCAGTTCAAAGATGAACAAATTTCTTCGAGAGAAAGAGAGCAGCAGCGCGTTTGATTCAGAATTGGCTTCCTTATCTAGGGTTCACCACAAAAACCTGGTTAGGCTAGTTGGGTTTTGCGAATCAGGGAGGGACGACGAGAGGCTCTTAGTTTATGAATACATGAAAAATGAAGGACTTTACCATCGTTTGCACGACAAGAACAATGTGGAAAAGAGTAGCAGTCCCTTAAATTCTTGGAAGATGAGGATCAAAATATCATTAGACACTGCACGCGGCATCGAATACCTGCACAACTACGCAGTTCCTCCTATAATTCATCGAGACATCAAGTCTTCTAATATATTATTGGACGCAAATTGGACTGCAAGAGTATCTGATTTTGGATTATCAATGATATTAATGGGACCAGAAACTGATTATAGTTCGACTAGGACAGTTGGGACAATTGGGTACATGGATCCAGGTTACTTTAGACTAAATGTGTTGACGACAGAGAGTGATGTATATAGTCTTGGAGTTGTGTTGCTAGAGCTCTTGACAGGGAAGAGGGCTATATTTAAGAATGGGGAATATGGTGTTCCAACTAGTGTAGTGGATTTTGCAGTACCAGCCATTATAGCCGGAGAATTGCCCAAGGTTTTGGACGCGAGGGTTGGATCGCAGCTGGAGGAGAATGAAGCAGAGGCAGTAGAGCTAGTTGCTTGTATCGCAATTGACTGTGTGAATTTGGAAGGGAGACAGAGACCTACCATGGCTAACATTGTGGCGAATTTGGAGCGAGCATTGGTTTTTTGTGGTGATAATAGCCAATGCAGCAGCATCTCTAGTGGCCCAATCTCCATTGATTCAGATTAA

Network for GWHGAAZE011890

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	44	312	3.60E-53
PF00069.26	Pkinase	438	725	3.90E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.520
	SRR3591706	second leaf	0.064
	SRR3591707	mature leaf	0.036
	SRR3591708	Shoot apex	0.325
	SRR3591709	Stem	0.723
	SRR3591710	White floral bud	0.620
	SRR3591711	White flower	0.904
	SRR3591712	Green floral bud	0.386
	SRR3591713	Yellow flower	0.350
SRP173429	SRR8316895	Juvenile bud stage	4.065
	SRR8316896	Juvenile bud stage	2.212
	SRR8316897	Juvenile bud stage	1.439
	SRR8316894	Third green stage	1.281
	SRR8316900	Third green stage	1.286
	SRR8316901	Third green stage	1.730
	SRR8316898	Complete white stage	0.031
	SRR8316899	Complete white stage	3.876
	SRR8316903	Complete white stage	0.045
	SRR8316902	Silver flowering stage	0.032
	SRR8316904	Silver flowering stage	0.116
	SRR8316905	Silver flowering stage	0.050
	SRR8316906	Gold flowering stage	0.365
	SRR8316907	Gold flowering stage	0.165
	SRR8316908	Gold flowering stage	0.470
SRP132670	SRR6706286	Control	0.463
	SRR6706287	Light intensity 50%	0.931
	SRR6706288	Light intensity 20%	0.460
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.448
	CNS0095593	Slightly white alabastrum(diploid) 2	3.016
	CNS0095594	Slightly white alabastrum(diploid) 3	4.089
	CNS0095595	Whole white alabastrum(diploid) 2	1.763
	CNS0095596	Whole white alabastrum(diploid) 3	0.388
	CNS0095597	Whole white alabastrum(diploid) 4	1.412
	CNS0095598	Silvery flower (diploied) 1	8.474
	CNS0095599	Silvery flower (diploied) 2	6.434
	CNS0095600	Silvery flower (diploied) 3	3.099
	CNS0095601	Golden flower (diploid) 1	11.083
	CNS0095602	Golden flower (diploid) 2	5.076
	CNS0095603	Golden flower (diploid) 3	4.905
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.144
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.176
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.298
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.025
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.042
	CNS0095610	Silvery flower (tetraploid) 1	0.110
	CNS0095611	Silvery flower (tetraploid) 2	0.091
	CNS0095612	Silvery flower (tetraploid) 3	0.625
	CNS0095613	Golden flower (tetraploid) 1	0.716
	CNS0095614	Golden flower (tetraploid) 2	0.555
	CNS0095615	Golden flower (tetraploid) 3	0.031
CRA001975	CRR073297	Stem 1	0.764
	CRR073298	Stem 2	0.721
	CRR073299	Stem 3	0.898
	CRR073300	Leaf 1	0.900
	CRR073301	Leaf 2	2.564
	CRR073302	Leaf 3	0.371
	CRR073303	Juvenile bud 1	0.674
	CRR073304	Juvenile bud 2	0.129
	CRR073305	Juvenile bud 3	2.360
	CRR073306	Third green 1	0.047
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.133
	CRR073309	Second white 1	0.111
	CRR073310	Second white 2	0.058
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.200
	CRR073313	Silver flowering 2	0.182
	CRR073314	Silver flowering 3	0.263
	CRR073315	Gold flowering 1	1.706
	CRR073316	Gold flowering 2	2.027
	CRR073317	Gold flowering 3	1.500
	CRR073318	Tawny withering 1	3.349
	CRR073319	Tawny withering 2	3.741
	CRR073320	Tawny withering 3	4.405