Gene detail

Detail information of GWHGAAZE011887

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14018.1	1.0455E-159	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LY50\|ACCR3_ARATH	4E-140	Putative serine/threonine-protein kinase-like protein CCR3 (Precursor)
trEMBL	tr\|A0A068V294\|A0A068V294_COFCA	4E-160	Coffea canephora DH200=94 genomic scaffold, scaffold_78 {ECO:0000313\|EMBL:CDP14018.1}
TAIR10	AT3G55950.1	2E-112	CRINKLY4 related 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74757374	74760407	-
GWHAAZE00000003	mRNA	74757374	74760407	-
GWHAAZE00000003	exon	74757374	74758446	-
GWHAAZE00000003	exon	74759213	74760407	-
GWHAAZE00000003	CDS	74759213	74760407	-
GWHAAZE00000003	CDS	74757374	74758446	-

Transcript Sequence
>GWHTAAZE011899 ATGATGCCGATACCAGTTCCGCCACTGCCGGAGCACTTAAACAACCTGCCGTTGGATCCTCCAGAGCCATTTTGCCATTCCTTCTCCCTTGCTGAGATCTTATCCAGGACTCACAACTTTGACGAGTCATTGGTTATCGGGCAGGGCGGATTCGGTAAAGTATACAAAGGGGTCATTGACAACGAGACAAGTGTTGTTGCTGTAAAAAGGCTGAGTTCCACTTCCAAGCAAGGAGATTCTGAATTCAGAACCGAGATTGAAATGCTTTCAAAATTTCGACACACACATATTGTGTCTCTGATCGGTTATTGTTACAGTTCTACTGAGATGGTACTTGTTTATGAATATATGGTCAACGGTTCACTCGCGGATCATTTGTACAAAACTGGCAAGTATCGTGGTGGTCCTGCTTTATCTTGGGTGCAGCGTCTCAAGATTTGTCTAGGAGCTGCTCGTGGCTTGGACTACCTCCATACAGGTACCGGTGTCATACATCGTGATGTTAAGAGTTCGAACATCCTGTTAGACAAAAATTGTGCAGCTAAAGTTTCAGACTTCGGGTTGTCTAGAATAAGCCCAATTGATCAGTCATGCACTCATATCAGCACAAATGTTAAAGGGACAACGGGGTATATGGATCCAGAATATCTGTTGACCCTCAAATTGACCATGAAATCCGATGTCTACTCTTTTGGGGTTGTATTATTTGAAGTGTTGTGTGGAAGGCAAGCGGTGGATTTAAGGCTTGATGACGAGCAATGGAGTCTTGCTAGGTGGGCCCAACACTGTATTGAAAAAGGAACACTTCATCAGATTATTGATCCTAATTTGAGGTGGGAAATTTTGCCCGAGTCTTATACAGAATTTGCACGAATTGCAAATCAATGCTTATGTTATCAGTCGAAAAAACGTCCTACGATGACTCAAGTCGTGGCGTCACTCGAGTTAGCCTTAGCATTGCAATTAGGACATAAAGATACTTCTGCATTTGAAATGGAGTTAGTTTGTACGAGTGAGGCACCTGAAAACATAGAGAAGGTTGATTCAAAAATGGTGCAAGAAATGGCTATCAAATTTGGGAGTTGTGATGAGGATAATAAAGATATCCGGCGGTCTCAAGTGAAGCCTACCAAAAGAAAGGCACTCAGAAAAATGTTGCAATTGTTTATGTTTCGCACAGTTCGTGAGGCACCAGTAAATGGAAGAACTCGAGAAGGTTCAGGCGTCAAATTAAGGAGCGGCACCTCAAAAACACATATAGATAGGCCCGAAGAATTCTTGTTTTCAGACCTTGCTGCGGCCACCAACAATTTCTCCCTGGAGAACAAGATTGGTGCCGGTAGCTTTGGGAAAGTGTACAAAGGCAAACTACTAGATGGACGAGAGGTCGCTATTAAAAGGGAAGAGATGGCCAGTTCAAAGACGAAGAAATTTCTTCGAGAGAAAGAAAGCAGCAGCGCATTTGATTCAGAATTGGCTTCCTTATCTAGGGTTCATCACAAAAACCTGGTTAGGCTAGTTGGGTTTTGCGAATCAGGGAGGGACGAGGAGAGGCTCTTAGTTTATGAATACATGAAAAATGAAGGACTTTACCATCGTTTGCACGACAAGAACAATGTGGAAAAGAGTAGCAGTCCCTTAAATTCTTGGAAGATGAGGATCAAAATATCATTAGACGCTGCACGTGGCATCGAATACCTGCACAACTACGCAGTTCCTCCTATAATTCATCGAGACATCAAGTCTTCTAATATATTACTGGACGCAAATTGGACTGCAAGAGTATCTGATTTTGGATTATCAATGATATTAATGGGACCAGAAACTGATTATAGTTCGACTAGGACAGTTGGGACAATTGGGTACATGGACCCAGGTTACTTTAGACTAAATGTGTTGACGACAGAGAGTGATGTATATAGTCTTGGAGTCGTGTTACTAGAGCTCTTGACAGGGAAGAGGGCTATATTTAAGAATGGGGAAGATGGTGTTCCAACTAATGTAGTGGATTTTGCAGTACCAGCCATTATAGCCGGAGAATTGCCCAAGGTTTTGGACCCGAGGGTTGGATCGCAGCTGGAGGAGAATGAAGCAGAGGCAGTAGAGCTAGTTGCTTATACCGCAATTCACTGTGTGAATTTGGAAGGGAGAGAGAGACCTACCATGGCTGACATTGTGGCGAATTTGGAGCGAGCGTTGGCTTTATGTGGTGATAATAGCCATGGCAGCAGCATCTCTAGTGGCTCAATCTCCATTGATTCAGATTAA

Network for GWHGAAZE011887

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	44	312	1.00E-52
PF00069.26	Pkinase	439	726	7.60E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.991
	SRR3591706	second leaf	0.433
	SRR3591707	mature leaf	0.633
	SRR3591708	Shoot apex	1.280
	SRR3591709	Stem	6.345
	SRR3591710	White floral bud	5.863
	SRR3591711	White flower	6.387
	SRR3591712	Green floral bud	3.529
	SRR3591713	Yellow flower	2.685
SRP173429	SRR8316895	Juvenile bud stage	8.138
	SRR8316896	Juvenile bud stage	4.331
	SRR8316897	Juvenile bud stage	6.919
	SRR8316894	Third green stage	2.244
	SRR8316900	Third green stage	3.678
	SRR8316901	Third green stage	4.809
	SRR8316898	Complete white stage	0.284
	SRR8316899	Complete white stage	9.204
	SRR8316903	Complete white stage	0.229
	SRR8316902	Silver flowering stage	0.263
	SRR8316904	Silver flowering stage	0.624
	SRR8316905	Silver flowering stage	0.235
	SRR8316906	Gold flowering stage	0.635
	SRR8316907	Gold flowering stage	0.817
	SRR8316908	Gold flowering stage	0.871
SRP132670	SRR6706286	Control	1.382
	SRR6706287	Light intensity 50%	1.875
	SRR6706288	Light intensity 20%	1.513
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.648
	CNS0095593	Slightly white alabastrum(diploid) 2	5.409
	CNS0095594	Slightly white alabastrum(diploid) 3	2.719
	CNS0095595	Whole white alabastrum(diploid) 2	2.966
	CNS0095596	Whole white alabastrum(diploid) 3	0.780
	CNS0095597	Whole white alabastrum(diploid) 4	2.632
	CNS0095598	Silvery flower (diploied) 1	10.562
	CNS0095599	Silvery flower (diploied) 2	8.069
	CNS0095600	Silvery flower (diploied) 3	4.475
	CNS0095601	Golden flower (diploid) 1	11.749
	CNS0095602	Golden flower (diploid) 2	6.866
	CNS0095603	Golden flower (diploid) 3	7.355
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.582
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.867
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.725
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.607
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.556
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.673
	CNS0095610	Silvery flower (tetraploid) 1	0.830
	CNS0095611	Silvery flower (tetraploid) 2	0.492
	CNS0095612	Silvery flower (tetraploid) 3	0.480
	CNS0095613	Golden flower (tetraploid) 1	0.265
	CNS0095614	Golden flower (tetraploid) 2	0.888
	CNS0095615	Golden flower (tetraploid) 3	0.082
CRA001975	CRR073297	Stem 1	2.333
	CRR073298	Stem 2	2.444
	CRR073299	Stem 3	1.720
	CRR073300	Leaf 1	3.258
	CRR073301	Leaf 2	3.637
	CRR073302	Leaf 3	2.720
	CRR073303	Juvenile bud 1	2.272
	CRR073304	Juvenile bud 2	2.146
	CRR073305	Juvenile bud 3	4.099
	CRR073306	Third green 1	0.814
	CRR073307	Third green 2	0.439
	CRR073308	Third green 3	1.100
	CRR073309	Second white 1	0.105
	CRR073310	Second white 2	0.323
	CRR073311	Second white 3	0.367
	CRR073312	Silver flowering 1	1.068
	CRR073313	Silver flowering 2	1.153
	CRR073314	Silver flowering 3	0.367
	CRR073315	Gold flowering 1	3.404
	CRR073316	Gold flowering 2	5.030
	CRR073317	Gold flowering 3	3.050
	CRR073318	Tawny withering 1	4.840
	CRR073319	Tawny withering 2	5.692
	CRR073320	Tawny withering 3	7.859