Gene detail

Detail information of GWHGAAZE011877

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007008964.1	2.5434E-152	CRINKLY4 related 3, putative [Theobroma cacao]
Swissprot	tr\|Q9LY50\|ACCR3_ARATH	3E-130	Putative serine/threonine-protein kinase-like protein CCR3 (Precursor)
trEMBL	tr\|A0A061FT55\|A0A061FT55_THECC	9E-153	CRINKLY4 related 3, putative {ECO:0000313\|EMBL:EOY17774.1}
TAIR10	AT3G55950.1	3E-110	CRINKLY4 related 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74578164	74581011	-
GWHAAZE00000003	mRNA	74578164	74581011	-
GWHAAZE00000003	exon	74578164	74579362	-
GWHAAZE00000003	exon	74579868	74580320	-
GWHAAZE00000003	exon	74580567	74581011	-
GWHAAZE00000003	CDS	74580567	74581011	-
GWHAAZE00000003	CDS	74579868	74580320	-
GWHAAZE00000003	CDS	74578164	74579362	-

Transcript Sequence
>GWHTAAZE011889 ATGATGATGCCGCCGTTAGTACCAGTGGAGAAATTATGCCGCCCATTCTCGCTTGCCGAGATCTTATCCGCAACCAACGGCTTTGATGAATCATTGATCATCGGCAAGGGAGGATTTGGGCAGGTATACAAAGGGGTCATTGATGACGGGGCAAATGTAGTTGCTATAAAACGGCTGGATTCTACGTCCAAACAAGGAGAGTCTGAATTCAGAAACGAAATTGAAATGCTTTCAAAATTTCGACATTCTCATATTGTGTCTCTAATAGGTTACTGTTATAGTTCCAGTGAAATGATCCTTATTTATGAGTATATGAGTAATGGATCTCTGGCAGATCATCTTTACAAAATATATGACAATGTTAGAACTGGTTGTACTCTATCTTGGGTGCAACGTCTCAAGATTTGTCTAGGAGCTGCTCGTGGCATCGATTACCTTCATACAGTGCTGTGTGGAAAGCGAGCAGGATATAAGACTCTCTATAGTGAGTTACAGGGTCTTGCAGGATGGGTGTCAAAATATATCGAAGAAGGAACACTACATCGAATCATCGATTCTAATTTGAGGTGGGAAATTTTGCCGAATTCTTTGACAAAGTTTGTTGAAATTGCACATCAATGCTTGTGCTACCAGTCGAAAAACCGCCCTACAATGACTCAAGTGGTGGCCGCACTTGAATTGGCATTGGCATTACAACTAGGAAGCGAAGGCTCTTTTTCAAATGAAATGGAGATTTTGGACAACCAAGAAGATGTCAATTGTAGAATGGTACAACAAGGTGCTACTAAATTTGGCAACAGTTATGAGCATAGTGTCAAGATTATGCAGCCTCGTGTTATAAAGCCTTTCAGAAAGATGCTGCAGTCTCTTATTTTTTGTGTGCCTCGGGAGGCATCAGGAAACACTTTAGCTCTTGGATTGAACAATACTCATGCCATTAGGAGATTGAATAATTCAGTGGTTAGTGGGGAAAGTGGTAGAGGATTTACAATCAAAGTTCCACAAGGACTTTCAAATAGCAGTAGTCCACCTTCATTATTGTCGACCACTAGACGCCAGAGGCTGAGAGAGTTTAGGCGCCAAAGGAGCGGCACATCCTCAAAACATGCAGATAGGAAGGCTAAAGAATTCATGTTTTCAGACCTTGCTGCCGCCACCAACAATTTCTCCTGGGATAACAAGATTGGCACCGGTAGCTTTGGGATAGTGTACAAAGGAAAACTACTAGACGGACAAGAGGTTGCCATTAAAAGGGGAGAGACAGCCAGTTCTAAGAAGAAATTTCTTCGAGAGAAAGAGAGCAGAAGCGCGTTTGATTCAGAATTGGCTTCCTTATCTAGGGTTCACCACAAAAACTTGGTTAGGCTAGTTGGGTTTTGCGAATCAGGGGGGGACGAGGAGAGGCTCTTAGTTTATGAATACATGAAAAATGAAGGACTTTACCATCGTTTGCACGACAAGAACAACGTGGAAAAAAGTAGCAGTCCCTTAAATTCTTGGAAGATGAGGATCAAAATATCATTAGACGCTGCACGTGGCATTGAATACCTGCACAACTACGCAGTTCCTCCTATAATTCATCGAGACATAAAGTCCTCTAATATATTACTGGATGCAAATTGGACTGCAAGAGTATCTGATTTTGGATTATCAATATTAATTGGACCGACAGTTGGGTACATCGATCCAGAATATTATGGACAAAATGTGTTGACTGCTGAGAGTGATGTATATAGTCTTGGAGTTGTGTTACTAGAGATATTGACCGGGAAGAGGGCTATATTAAAGACAGGTGAAAATGGGGGTGCACCAACTAGTGTAGTGGATTTTGCAGTACCAGCCATTATTGACAGAGAATCGTTCAAGGTTTTGGACCCGAGGGTTGGGACGCCGCTGGGGCAGAATGAAGCAGAGGCAGTAGATCTAGTTGCAAACACTGCAATGTACTGTGTGAATTTGCAACGGACATATAGACCTACCATGACTCAAATTGTTGCTGATTTGGAGCGAGCGTTGGCTTTATGCGACAACTCGTCCGCTGATTCTTCAACATCAATTGGTTTGGACCTCCACTTAGTTTCATCCAAGCTTCAACTT

Network for GWHGAAZE011877

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	34	149	3.10E-21
PF00069.26	Pkinase	392	666	1.80E-37

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CR4L

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.444
	SRR3591706	second leaf	8.408
	SRR3591707	mature leaf	1.796
	SRR3591708	Shoot apex	16.426
	SRR3591709	Stem	47.650
	SRR3591710	White floral bud	9.760
	SRR3591711	White flower	10.988
	SRR3591712	Green floral bud	6.536
	SRR3591713	Yellow flower	3.371
SRP173429	SRR8316895	Juvenile bud stage	14.354
	SRR8316896	Juvenile bud stage	6.087
	SRR8316897	Juvenile bud stage	6.533
	SRR8316894	Third green stage	4.151
	SRR8316900	Third green stage	4.758
	SRR8316901	Third green stage	6.475
	SRR8316898	Complete white stage	0.250
	SRR8316899	Complete white stage	11.017
	SRR8316903	Complete white stage	0.158
	SRR8316902	Silver flowering stage	0.524
	SRR8316904	Silver flowering stage	1.011
	SRR8316905	Silver flowering stage	0.428
	SRR8316906	Gold flowering stage	1.385
	SRR8316907	Gold flowering stage	1.446
	SRR8316908	Gold flowering stage	3.602
SRP132670	SRR6706286	Control	1.662
	SRR6706287	Light intensity 50%	3.070
	SRR6706288	Light intensity 20%	1.709
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.643
	CNS0095593	Slightly white alabastrum(diploid) 2	9.476
	CNS0095594	Slightly white alabastrum(diploid) 3	7.884
	CNS0095595	Whole white alabastrum(diploid) 2	4.447
	CNS0095596	Whole white alabastrum(diploid) 3	0.730
	CNS0095597	Whole white alabastrum(diploid) 4	3.123
	CNS0095598	Silvery flower (diploied) 1	6.122
	CNS0095599	Silvery flower (diploied) 2	12.924
	CNS0095600	Silvery flower (diploied) 3	7.303
	CNS0095601	Golden flower (diploid) 1	16.521
	CNS0095602	Golden flower (diploid) 2	7.830
	CNS0095603	Golden flower (diploid) 3	8.471
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.814
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.940
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.206
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.248
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.485
	CNS0095610	Silvery flower (tetraploid) 1	1.198
	CNS0095611	Silvery flower (tetraploid) 2	0.196
	CNS0095612	Silvery flower (tetraploid) 3	0.494
	CNS0095613	Golden flower (tetraploid) 1	1.108
	CNS0095614	Golden flower (tetraploid) 2	0.713
	CNS0095615	Golden flower (tetraploid) 3	0.122
CRA001975	CRR073297	Stem 1	2.291
	CRR073298	Stem 2	1.328
	CRR073299	Stem 3	0.802
	CRR073300	Leaf 1	3.383
	CRR073301	Leaf 2	2.404
	CRR073302	Leaf 3	1.333
	CRR073303	Juvenile bud 1	2.189
	CRR073304	Juvenile bud 2	2.457
	CRR073305	Juvenile bud 3	4.144
	CRR073306	Third green 1	0.463
	CRR073307	Third green 2	0.313
	CRR073308	Third green 3	1.035
	CRR073309	Second white 1	0.218
	CRR073310	Second white 2	0.084
	CRR073311	Second white 3	0.027
	CRR073312	Silver flowering 1	0.419
	CRR073313	Silver flowering 2	0.215
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.421
	CRR073316	Gold flowering 2	3.656
	CRR073317	Gold flowering 3	2.700
	CRR073318	Tawny withering 1	2.309
	CRR073319	Tawny withering 2	8.565
	CRR073320	Tawny withering 3	0.806