Gene detail

Detail information of GWHGAAZE011876

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006435742.1	3.06965E-68	hypothetical protein CICLE_v10030732mg [Citrus clementina]
Swissprot	tr\|Q9LY50\|ACCR3_ARATH	1E-62	Putative serine/threonine-protein kinase-like protein CCR3 (Precursor)
trEMBL	tr\|V4T6X7\|V4T6X7_9ROSI	1E-68	Uncharacterized protein {ECO:0000313\|EMBL:ESR48982.1}
TAIR10	AT3G55950.1	8E-55	CRINKLY4 related 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74551133	74554256	-
GWHAAZE00000003	mRNA	74551133	74554256	-
GWHAAZE00000003	exon	74551133	74551143	-
GWHAAZE00000003	exon	74551394	74551699	-
GWHAAZE00000003	exon	74551958	74552596	-
GWHAAZE00000003	exon	74553113	74553565	-
GWHAAZE00000003	exon	74553812	74554256	-
GWHAAZE00000003	CDS	74553812	74554256	-
GWHAAZE00000003	CDS	74553113	74553565	-
GWHAAZE00000003	CDS	74551958	74552596	-
GWHAAZE00000003	CDS	74551394	74551699	-
GWHAAZE00000003	CDS	74551133	74551143	-

Transcript Sequence
>GWHTAAZE011888 ATGATGATGCCGCCGTTAGTACCAGTGGAGAAATTATGCCGCCCATTCTCGCTTGCCGAGATCTTATCCGCAACCAATGGCTTTGATGAATCATTGATCATCGGCAAGGGAGGATTTGGACAGGTATACAAAGGGGTCATTGATGACGGGGCAAATGTAGTTGCTATAAAACGGCTGGATTCTACGTCCAAACAAGGAGAGTCTGAATTCAGAAACGAAATTGAAATGCTTTCAAAATTTCGACATTCTCATATTGTGTCTCTAATAGGTTACTGTTATAGTTCCAGTGAAATGATCCTTATTTATGAGTATATGAGTAATGGATCTCTGGCAGATCATCTTTACAAAATATATGACAATGTTAGAACTGGTTGTACTCTATCTTGGGTGCAACGTCTCAAGATTTGTCTAGGAGCTGCTCGTGGCATCGATTACCTTCATACAGTGCTGTGTGGAATGCGAGTGAGAGATTTGACTCTCAATAGTGATTTACAGGGTCTTGCAGGATGGGTGTCAAAATATATCGAAGAAGGAACACTACATCGAATCATCGATTCTAATTTGAGGTGGGAAATTTTGCCGAATTCTTTGACAAAGTTTGTTGAAATTGCACATCAATGCTTGTGCTACCAGTCGAAAAACCGCCCTACAATGACTCAAGTGGTGGCCGCACTTGAATTGGCATTGGCATTACAACTAGGAAGCGAAGGCTCTTTTTCAAATGAAATGGAGATTGTGGACAACCAAGAAAATGTTGATTTTAGAATGGTACAACAAAGTGCTACTAAATTTGGCAACGGTTCTGAGCATAGTGTCAAGATTATGCAGCCTCGTGTTATAAAGCCTTTCAGAAAAATGCTGCAGTCGCTTATTTTTTGTGTGCCTCGGGAGGCATCAGGAAACACTTTAGCTCTTGGATTGAACAATACTCGTGCCATTAGGAGATTGAATAATTCAGTGGTTTGTGGGGAAAGTGGTAGAGGATTTACAATCAAAGTTCCGCAAGGACTTTCAAATAGCAGTAGTCCACCTTCATTATTGTCGACCACTAGACGCCAGAGGCTGAGAGAGTTCAGGCGCCAAAGGAGCAGCACGTCCCCAAAACATGCAGATAGGAAGGCTGAAGAATTCATTTTTTCAGACCTTGCTGCCGCCACCAACAATTTCTCCTGGGATAACAAGATTGGCACCGGTAGCTTTGGGATAGTGTACAAAGGAAAACTACTAGACGGACAAGAGGTTGCCATTAAAAGGGGAGAGATGGCCAGTTCTAAGATGAAGAAATTTCTTCGAGAGAAAGAGAGCAGAAGCGCGTTTGATTCAGAATTGGCTTCCTTATCTAGGGTTCACCACAAAAACTTGGTTAGGCTAGTTGGGTTTTGCGAATCGAGGGGGGACGAGGAGAGGCTCTTAGTTTATGAATACATGAAAAATGAAGGACTTTACCATCATTTGCACGACAAGAACAACGTGGAAAAGAGTAGCAGTCCCTTAAATTCTTGGAAGATGAGGATCAAAATATCATTAGACGCTGCACGTGAAAATGGGGGTGCACCAACTAGTGTAGTGGATTTTGCAGTACCAGCCATTATTGACAGAGAATCGTTCAAGGTTTTGGACCCGAGGGTTGGGACGCCGCTGGGGCAGAATGAAGCAGAGGCAGTAGATCTAGTTGCAAACACTGCAATGTACTGTGTGAATTTGCAACGGACATATAGACCTACCATGACTCAAATTGTTGCTGATTTGGAGCGAGCGTTGGCTTTATGCGACAACTCGTCCGCTGATTCTTCAACATCAATTGGTTTGAACCTCCACTTAGTTTCATCCAAGCTTCAACTTGACGGTTATTAA

Network for GWHGAAZE011876

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	34	149	2.40E-21
PF07714.18	PK_Tyr_Ser-Thr	391	494	4.50E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.345
	SRR3591706	second leaf	1.707
	SRR3591707	mature leaf	0.211
	SRR3591708	Shoot apex	3.103
	SRR3591709	Stem	8.003
	SRR3591710	White floral bud	2.099
	SRR3591711	White flower	2.503
	SRR3591712	Green floral bud	1.708
	SRR3591713	Yellow flower	0.763
SRP173429	SRR8316895	Juvenile bud stage	5.562
	SRR8316896	Juvenile bud stage	1.719
	SRR8316897	Juvenile bud stage	2.919
	SRR8316894	Third green stage	0.745
	SRR8316900	Third green stage	0.599
	SRR8316901	Third green stage	1.210
	SRR8316898	Complete white stage	0.195
	SRR8316899	Complete white stage	2.499
	SRR8316903	Complete white stage	0.110
	SRR8316902	Silver flowering stage	0.171
	SRR8316904	Silver flowering stage	0.194
	SRR8316905	Silver flowering stage	0.052
	SRR8316906	Gold flowering stage	0.479
	SRR8316907	Gold flowering stage	0.169
	SRR8316908	Gold flowering stage	0.828
SRP132670	SRR6706286	Control	0.368
	SRR6706287	Light intensity 50%	0.825
	SRR6706288	Light intensity 20%	0.346
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.750
	CNS0095593	Slightly white alabastrum(diploid) 2	2.351
	CNS0095594	Slightly white alabastrum(diploid) 3	2.078
	CNS0095595	Whole white alabastrum(diploid) 2	1.232
	CNS0095596	Whole white alabastrum(diploid) 3	0.204
	CNS0095597	Whole white alabastrum(diploid) 4	0.813
	CNS0095598	Silvery flower (diploied) 1	1.838
	CNS0095599	Silvery flower (diploied) 2	3.793
	CNS0095600	Silvery flower (diploied) 3	1.386
	CNS0095601	Golden flower (diploid) 1	4.290
	CNS0095602	Golden flower (diploid) 2	1.583
	CNS0095603	Golden flower (diploid) 3	2.316
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.421
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.268
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.995
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.245
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.104
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.293
	CNS0095610	Silvery flower (tetraploid) 1	0.650
	CNS0095611	Silvery flower (tetraploid) 2	0.178
	CNS0095612	Silvery flower (tetraploid) 3	0.428
	CNS0095613	Golden flower (tetraploid) 1	0.366
	CNS0095614	Golden flower (tetraploid) 2	0.386
	CNS0095615	Golden flower (tetraploid) 3	0.032
CRA001975	CRR073297	Stem 1	0.541
	CRR073298	Stem 2	0.322
	CRR073299	Stem 3	0.223
	CRR073300	Leaf 1	0.511
	CRR073301	Leaf 2	0.451
	CRR073302	Leaf 3	0.285
	CRR073303	Juvenile bud 1	0.440
	CRR073304	Juvenile bud 2	0.527
	CRR073305	Juvenile bud 3	0.801
	CRR073306	Third green 1	0.187
	CRR073307	Third green 2	0.081
	CRR073308	Third green 3	0.132
	CRR073309	Second white 1	0.022
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.059
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.211
	CRR073316	Gold flowering 2	1.200
	CRR073317	Gold flowering 3	1.017
	CRR073318	Tawny withering 1	1.085
	CRR073319	Tawny withering 2	3.610
	CRR073320	Tawny withering 3	0.412