Gene detail

Detail information of GWHGAAZE011873

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354974.1	0	PREDICTED: receptor-like protein kinase FERONIA-like [Solanum tuberosum]
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	2E-111	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|M1APN7\|M1APN7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400027429}
TAIR10	AT3G51550.1	7E-96	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74491265	74499756	+
GWHAAZE00000003	mRNA	74491265	74499756	+
GWHAAZE00000003	exon	74491265	74491334	+
GWHAAZE00000003	exon	74491415	74491442	+
GWHAAZE00000003	exon	74491553	74492886	+
GWHAAZE00000003	exon	74494199	74494533	+
GWHAAZE00000003	exon	74498072	74498207	+
GWHAAZE00000003	exon	74498431	74498567	+
GWHAAZE00000003	exon	74498671	74498845	+
GWHAAZE00000003	exon	74499437	74499756	+
GWHAAZE00000003	CDS	74491265	74491334	+
GWHAAZE00000003	CDS	74491415	74491442	+
GWHAAZE00000003	CDS	74491553	74492886	+
GWHAAZE00000003	CDS	74494199	74494533	+
GWHAAZE00000003	CDS	74498072	74498207	+
GWHAAZE00000003	CDS	74498431	74498567	+
GWHAAZE00000003	CDS	74498671	74498845	+
GWHAAZE00000003	CDS	74499437	74499756	+

Transcript Sequence
>GWHTAAZE011885 AAGCTTCTCCCACAATTGGGCTTTGCCCTTCGGGTTGTTTCTGATGAATTCACCAAAAGACCAACTGCATTCCTCCTAGATATAGTGAAGAATCAAAGTCCTTCCATTGCCAATCATGGTCACTTGCGCGTACATCTGTTAAACCAATATTCCACGCATTCAGCTCCAAAGCCACGAAAACTAGCTTTTGGCCTTGTGAACACGATTGCAAACGGTGTTATAATTGTAATCACTATACTGAATATTGTTGTTTATAAGTTGCGGGAAATTCACGAGGCAAATCTTCGTGAGAAATATACACCGTCAGAACAATTATGCCACCAGTTTTTACTTGCTGATATCCTTTTAGCGACCAAAAACTTTGACGAATCATTGGTTGTTGGTCAGGGTGGTTTTGGAAAGGTATACAAAGGGGCAATAGATAATGGCATGGTTACTGTTGCCATAAAGCGGTTAAACCCCATGTCCAAGCAAGGAGCTCCCGAGTTTTTGACAGAGATTGAGTTGCTGTCTAAAGTTCGACATAGCAATATTGTCTCATTAATTGGTTATTGCAATGATTGTGATGAGATGATCCTTGTGTATGAATATATGGTCCGTGGAACCCTTGCTGATAATATGCATAGAAATAATAATAAATCTGCTTTACCTTGGGCTCAACGTATAAAGATATGCATTGGGGCTGCACGTGGGTTGGATTATCTTCATACTGGTACGAGTGACCACAACAGAATCATCCACCGCGATGTGAAGAGCCCAAATATTCTATTGGGTGAGAACTGGACTGCTAAGATTTCTGACTTTGGGATGGCTAAAATAGGCCCCACGAATCAGTTGCACACCCACGTGAGCACTAATGTCAAAGGCACATTTGGGTATGTAGATCCTGAGTACTACTTGACCCATCAATTGACAAGGAAATCTGATGTTTATGCATTTGGAGTTGTGTTGTTCGAAGTATTGTGTGGGAGGCGGGCAGTGGATTTAAGGCTTGATGAGGAGCAGAGGGGTCTCGCTGGCTGGGCCCAAGAATGCATCAAAGAAGGAAAACTAGATCAAATTGTTGACCCTAGTTTGAGAGGGCAGATATTGTCCGATTCTTTAACTGAGTTTGCACGAATTGCAGATCAATGCTTACATATGTTTTCCACAAAACGCCCTACAATGGCTGAGGTTGTGGTCGCACTTGAGCTTGCATTGACATTGCAAGAAAGAACAAAATTTTCTATTTTTGAAGAGGAGTTTTTTAATACAGGTGGCGGCTTTGACAATCAAGAGAATGCTGATTCTTCTATCGAAGAGGGGGAGGTTATCAATGGGAAAATTGAAGGGATTATGCAGTTGGATAGTGCGAGCAGCGAGGATTCTCATGTAAAGCCTGCTAGGATAATGGCATTCACAAAGACAGTGCAGCAGTTCTTTTTTGGCACAGCCCTTAGTGATGCAAGGGCAACAAAGAACTACAAAAGCAACAATAACGATGGTGTAAACATGACGGTGTCAAGTAAAGACAGGGAAGTTGTTCAGCAAGTTGTGCCTCCAAATGGGCACGTTGGGGATCCAAATTTTAAAATGTTCACGTTTGCTCAATTGAGAGCCGCAACAGGGAACTTCAAAACAGAAAGGGTGGTGAACGAGGGACATTTTGGAAAAGTTTTCAAAGGTTGGTTGGATGAGAAGACGTATGAACCGTCTAGTGTTGGCATGAGAATGCCCATCGCTGTTAAAAAAATCAAGCTAACCTATCCAGAGATAAGAGAGTTTAAGTCAAAGGTGGAATTTTGGGGAAAATTTAGCCATCCTAATCTCCTTAAGATCTTGGGGTACTGCTTGGAAGACAGGGGCTTCTACCTTGTTCAGCAATACATGCGGAAGGGAAGCTTAGAAAACCACCTATTCAGAAATTCCCGGAAACCACTTACATGGGTTACAAGGCTTAAAATAGCTGTAGAAGCAGCTCGAGGCCTTGCTTTCTTGCACACATCTGAGAAAAAAGTCTTTTACTACCAGTTCAAGACCTCTAATATATTGCTGGATGGGGATTTTAATGCAAGGCTTTCGGATTTTGAACTCACAGGGTTAGAAAGAGAAAGCAACAACCTTGATTCACTAGTTACAAGAGTGCTTATGAGAAATCCGGAGAATAATGCTTATGCTTATGCTCATGCGGCTCCTGAGTACAAGGTCTTTGGTAAGTTACTTATTTTCATCAGTTGCCAGTTCAATTTGAAGAGTGATGTGTACAGCTTTGGGGTGGTGTTGCTGGAAATACTAACAGGCCAGCGGGCGCTAGATCGAAATCGGCCCTTGGAGAGCAGATATTTGGTGGACTGGTGCAGACCTTTCCCAATTGATAAAAGAAGGCTGAAGACGGTAATGGATCCACATTTAGAAGGACAGTATTCTCCAAAATGCGCAGTCGAATATGCGGCACTTGTAGGAAAATGTGTTGGTTCAAATGCTAAAAGCCGGCCATCAATAGAAGTCGTCTTGAAGACTTTGGAACATATCAATGCTATCGAGATGAAACCGTGA

Network for GWHGAAZE011873

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	126	395	7.30E-47
PF07714.18	PK_Tyr_Ser-Thr	539	833	2.50E-33

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.135
	SRR3591706	second leaf	0.036
	SRR3591707	mature leaf	0.032
	SRR3591708	Shoot apex	0.150
	SRR3591709	Stem	0.441
	SRR3591710	White floral bud	0.205
	SRR3591711	White flower	0.217
	SRR3591712	Green floral bud	0.620
	SRR3591713	Yellow flower	0.047
SRP173429	SRR8316895	Juvenile bud stage	0.762
	SRR8316896	Juvenile bud stage	0.944
	SRR8316897	Juvenile bud stage	0.042
	SRR8316894	Third green stage	0.224
	SRR8316900	Third green stage	0.331
	SRR8316901	Third green stage	0.530
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.026
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.014
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.426
	SRR6706287	Light intensity 50%	0.350
	SRR6706288	Light intensity 20%	0.276
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.810
	CNS0095593	Slightly white alabastrum(diploid) 2	0.445
	CNS0095594	Slightly white alabastrum(diploid) 3	0.733
	CNS0095595	Whole white alabastrum(diploid) 2	0.379
	CNS0095596	Whole white alabastrum(diploid) 3	0.226
	CNS0095597	Whole white alabastrum(diploid) 4	0.496
	CNS0095598	Silvery flower (diploied) 1	0.119
	CNS0095599	Silvery flower (diploied) 2	0.311
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.103
	CNS0095602	Golden flower (diploid) 2	0.038
	CNS0095603	Golden flower (diploid) 3	0.178
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.863
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.980
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.089
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.301
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.269
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.821
	CNS0095610	Silvery flower (tetraploid) 1	0.017
	CNS0095611	Silvery flower (tetraploid) 2	0.058
	CNS0095612	Silvery flower (tetraploid) 3	0.026
	CNS0095613	Golden flower (tetraploid) 1	0.004
	CNS0095614	Golden flower (tetraploid) 2	0.002
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.222
	CRR073298	Stem 2	0.325
	CRR073299	Stem 3	0.252
	CRR073300	Leaf 1	0.106
	CRR073301	Leaf 2	0.242
	CRR073302	Leaf 3	0.023
	CRR073303	Juvenile bud 1	0.346
	CRR073304	Juvenile bud 2	0.019
	CRR073305	Juvenile bud 3	0.084
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.022
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.031
	CRR073317	Gold flowering 3	0.023
	CRR073318	Tawny withering 1	0.144
	CRR073319	Tawny withering 2	0.364
	CRR073320	Tawny withering 3	0.000