Gene detail

Detail information of GWHGAAZE011871

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354974.1	0	PREDICTED: receptor-like protein kinase FERONIA-like [Solanum tuberosum]
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	6E-114	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|M1APN7\|M1APN7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400027429}
TAIR10	AT3G51550.1	2E-94	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74424436	74429893	+
GWHAAZE00000003	mRNA	74424436	74429893	+
GWHAAZE00000003	exon	74424436	74425759	+
GWHAAZE00000003	exon	74427763	74428091	+
GWHAAZE00000003	exon	74428259	74428394	+
GWHAAZE00000003	exon	74428602	74428738	+
GWHAAZE00000003	exon	74428843	74428972	+
GWHAAZE00000003	exon	74429493	74429893	+
GWHAAZE00000003	CDS	74424436	74425759	+
GWHAAZE00000003	CDS	74427763	74428091	+
GWHAAZE00000003	CDS	74428259	74428394	+
GWHAAZE00000003	CDS	74428602	74428738	+
GWHAAZE00000003	CDS	74428843	74428972	+
GWHAAZE00000003	CDS	74429493	74429830	+
GWHAAZE00000003	three_prime_UTR	74429831	74429893	+

Transcript Sequence
>GWHTAAZE011883 ATGTTCTATGCTAGGGTGCTGTCACTTCTCACCCTTCTCTACTTGGTCTTCCTCCATCATTCAATTCTTATCATTGCTGTTAACTTTCCCACTCCTAATTCTTCGACTGAAAACACTCCGATTTATGGTTACCGTTATTCGATGCCAAAGCCATGGAAACCGGTATTAGCTTTTGGTCGAGTTCACACGATTGCCACTGTTGGGACAATTGTAATCACTTTGTTGAATATATTTGTTTATAAGTTGCGGCAACTTCATGAAGCAAACCTTAGGGAGAACCTCAACATACAGTCACCAGAACAACCATGTCGTTGCTTCTCACTTGCTGATATACTATCCGCAACCCACAACTTTGACGAAGCATTGGTTATTGGGAAGGGTGGATTCGGAAAGGTGTATAAAGGGGTCGTGGACAATGGGGCAACTACTATTGCCATTAAGCGGTTGAATCCCATGTCCAAGCAGGGAGCCCATGAGTTTTGGACAGAGATTAAGATGCTCAGCAAAATTCGACATAGCCATATTGTCTCTCTAATTGGCTACTGCAATGATTGTCATGAGATGATTCTTGTTTATGAATATATGGTCCATGGGACACTTGCTGATAATTTGCACAAATCCGAGAAAACTGGTTATAATTCTACTCTATGTTGGGTCCAACGCCTCAAGATCTGTATCGAGGCGGCACGTGGACTAGACTATCTCCATACTGGCACGGGTGTACAGGACAGGGTCATACACCGTGACGTGAAGAGCTCCAACATTTTGCTGGATGAGAATTGGGCAGCTAAGATTTCGGACTTTGGGCTGTCCAAGATAGGCCCCGCCAATCAGTCATACAGCCATGTCAGCACCAACGTTAAAGGCACGTTTGGCTATGTGGATATGGAATACTTCCTGACTCACCAACTCACGAGGAAATCAGATGTTTACGCCTTTGGGGTTGTATTGTTTGAAGTGCTGTGCGGGAGGCCAGCAGTGGACCTAAGACTCAACGTGGAGCAGCGGGGTCTTGCTGGGTGGGCCCAACGCTGCATCAAAGAGGGGATGCTAGATCAGATTATCGATCCCACTTTGAGGTGGCAAATAGTGCCTAACTCATTGGTAGAATTTGTACGAATTGCAAATAAATGCTTGCACAGTCTTTCGAAAAAACGCCCTTCAATGGCCAAGGTTGTGGTCTCCCTTGAGCGCGCATTGGAATTGCAACAGAGACGTTATTCCTCTATGTCTGAGTGGGAGATTTTCGACAAAAGTGGACCTCATGACAGCCAAGAGAAAGTCAATTCTTTTGGGGAACAGCAGGCAGTTATCATGTTGGCAGATAATTGGGTTGCAGAGCCACTGGACAACAACATCAGCAACAATAACAACAACGAAAATGATGAGAACAGAGATGGAGATGTTTCCAAGCAAGTGCCTCCAAGTGTGCAAATTGTGACTCCTAATTTGAAAATGTTCACTTTAGCTGAATTAAAAACTGCAACAGGCAACTTTAGGCCGAATATGTTGTTGGGTGAAGGAAGTTTCGGAAAGGTTTATATTGGTTGGGTTGATGAGATGACCTATGCCCCATCAAAATTTGGCACAGGAATGGCCATCGCTGTTAAGAAAATTGATCCAATTGCCTCTAAAGGATTCAAAGATTGGCAGTTACAGAGGGCATTTTCACGTAAGTTTAGTCATTCAAGTTTTGTTAACTTCTTGGGATACTGCTTCGAAAACAAGGAAGTTCTCCTTGTTTATGAATACATGGAGAAGGGAAGCTTAGAAAGCCACCTTTTCAAAAAAGACGTAAAACCGCTTCCATGGTTTACAAGACTAAAGATAGCTATTGGAGCAGCTCGAGGCCTCGCTTTCTTGCACGCAACAGAGGAACAAGTCAATTATATAAGATTCAAGACCCGTGATATATTGCTAGATGGGAGTTTTAATGCAAAGCTTTCGGATTTTGATCTGGCAAAGCTATGTCAATTATATGGCTGTTCAAATGTTCTAACAAGGATGGGAGTTACAGCCACCTCTGCTTATGCAGCTCCAGAGTACAAGGTGACTGGTCATTCGGATGTAAAGAGCGACATCTATAGTTTGGGAGTGGTGTTGTTAGAATTACTAACAGGGTTACGAGCACACGATGCAAATCGTTCCATCGGGGAGAAAAATTTGGTGGAATTGGCTGCTCCTTCCCTACTTGATAAAAGAAAGATGAGATGGGTAATGGATCCACGACTGGAAGATGAGTACCCTCTGGAAGGCGCATTCAAACTCACTTCACTTGCACGAAAATGTCTTCAATATCTCCCCAAAAATCGACCTCCAATGGAAGAGGTCTTGAGCAGTTTAGAACATATTAATTCTATAAAGATGAAATCAAGAGGGAAGTCCAACCTCTAGCACTCTAGCTGATGCTGAAGCATTGCAAGGATACAATTGTACTTATATTTGCTCTTCATAATT

Network for GWHGAAZE011871

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	123	395	7.30E-49
PF07714.18	PK_Tyr_Ser-Thr	504	781	1.70E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.053
	SRR3591706	second leaf	0.064
	SRR3591707	mature leaf	1.371
	SRR3591708	Shoot apex	0.059
	SRR3591709	Stem	1.133
	SRR3591710	White floral bud	0.248
	SRR3591711	White flower	0.829
	SRR3591712	Green floral bud	0.350
	SRR3591713	Yellow flower	0.996
SRP173429	SRR8316895	Juvenile bud stage	0.498
	SRR8316896	Juvenile bud stage	0.546
	SRR8316897	Juvenile bud stage	0.376
	SRR8316894	Third green stage	0.054
	SRR8316900	Third green stage	0.493
	SRR8316901	Third green stage	0.070
	SRR8316898	Complete white stage	0.023
	SRR8316899	Complete white stage	0.506
	SRR8316903	Complete white stage	0.278
	SRR8316902	Silver flowering stage	0.235
	SRR8316904	Silver flowering stage	0.208
	SRR8316905	Silver flowering stage	0.027
	SRR8316906	Gold flowering stage	0.303
	SRR8316907	Gold flowering stage	0.591
	SRR8316908	Gold flowering stage	0.215
SRP132670	SRR6706286	Control	0.574
	SRR6706287	Light intensity 50%	0.505
	SRR6706288	Light intensity 20%	0.384
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.283
	CNS0095593	Slightly white alabastrum(diploid) 2	0.173
	CNS0095594	Slightly white alabastrum(diploid) 3	0.153
	CNS0095595	Whole white alabastrum(diploid) 2	0.215
	CNS0095596	Whole white alabastrum(diploid) 3	0.023
	CNS0095597	Whole white alabastrum(diploid) 4	0.184
	CNS0095598	Silvery flower (diploied) 1	0.805
	CNS0095599	Silvery flower (diploied) 2	0.716
	CNS0095600	Silvery flower (diploied) 3	0.333
	CNS0095601	Golden flower (diploid) 1	0.757
	CNS0095602	Golden flower (diploid) 2	0.753
	CNS0095603	Golden flower (diploid) 3	0.796
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.152
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.188
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.200
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.159
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.050
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.229
	CNS0095610	Silvery flower (tetraploid) 1	0.193
	CNS0095611	Silvery flower (tetraploid) 2	0.266
	CNS0095612	Silvery flower (tetraploid) 3	0.258
	CNS0095613	Golden flower (tetraploid) 1	0.296
	CNS0095614	Golden flower (tetraploid) 2	0.358
	CNS0095615	Golden flower (tetraploid) 3	0.212
CRA001975	CRR073297	Stem 1	0.547
	CRR073298	Stem 2	0.274
	CRR073299	Stem 3	0.076
	CRR073300	Leaf 1	0.293
	CRR073301	Leaf 2	0.387
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.050
	CRR073306	Third green 1	0.017
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.103
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.120
	CRR073312	Silver flowering 1	0.019
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.068
	CRR073315	Gold flowering 1	0.900
	CRR073316	Gold flowering 2	1.210
	CRR073317	Gold flowering 3	0.174
	CRR073318	Tawny withering 1	0.210
	CRR073319	Tawny withering 2	0.814
	CRR073320	Tawny withering 3	0.315