Gene detail

Detail information of GWHGAAZE011870

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	4.56901E-36	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FID9\|Y5389_ARATH	2E-33	Probable receptor-like protein kinase At5g38990 (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	2E-36	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT5G38990.1	2E-28	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74420720	74422732	+
GWHAAZE00000003	mRNA	74420720	74422732	+
GWHAAZE00000003	exon	74420720	74421179	+
GWHAAZE00000003	exon	74421431	74421705	+
GWHAAZE00000003	exon	74422502	74422732	+
GWHAAZE00000003	CDS	74420720	74421179	+
GWHAAZE00000003	CDS	74421431	74421705	+
GWHAAZE00000003	CDS	74422502	74422732	+

Transcript Sequence
>GWHTAAZE011882 ATGGGACAGTTACGGTTGCTGTTGAGCGGTTTAATCAGATGTCCAGACAAGGAGCTTGTGAATTTTGGAATGAAATTTAGATGCTGTCCAAATTTTGACACAGGTCATCTCGCCTCATTAATTGGGTATTGTAACATTGGGAAAGAGATGCACATCGTGTACGAATACATGGTCCGTGGAACCCTAGCTGATCATTTGCACAAAATCAGTTCAAAGAATAGTAGCGGTAATTCGACTCTATCTTGGATTCAATGGCTCAAAATTTGCATTGGGGCTGCACAAGGGTTGGACTACCTTCATTCTGGCACAGGTGTGACAAGAGTTATACAGCGAGACGTGAAGAGTTCAAGCATACTACTGGATGGGAATTGGGCTAGGATTTCAGAGTTTGGGATGTCTAAGATCGGTCCGGCTAATACGTCAATCACTCATGTAAGCACCAATGTCAAAGGCACATTCGATCAATGCTTGCATATGTTTATGAAAGAGTGTCCCACCATGGCTGAGATCGTAGTCTCCTTTGAGCTTGCGTTGACATTGCAAGAGAGAGTGGATTCTTTTGTTTTTGTTAAGTTTTTCAATGAAAACCAAGAGAATCCTAATTCTCTTACTAAGGAACATGAAGGTGTTATCAATCTTAACAATGATTTGCATCTGGAGGAGCAAATGGATGAGATTATAAAGCTGGGTGATGCAAGAAACGAACATCCTTGTGCGAAGCCTATCAAAAATAGGTTGAGATGTGGTCTTGGCCAAGAAGAAATGGCAGCCCTTGTCATCGCAGCAAACCCAAGAGTCAAATTTACTGATGAGCAAATCGAAGAAGTTTTTGACATAGTGTTTCAAACATATAATGAATTTATCGATGGGGAAAAAGGTCTCACCGTTAACGGGTTTTTGAAAACCTACAAAGACGGTGCTGGGGACCCTGATCATGACTTTGAGGTGATCGGACTTGCACTCTAG

Network for GWHGAAZE011870

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	24	136	1.60E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004713	molecular_function	protein tyrosine kinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.135
	SRR3591711	White flower	0.166
	SRR3591712	Green floral bud	0.430
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.642
	SRR8316896	Juvenile bud stage	0.719
	SRR8316897	Juvenile bud stage	0.212
	SRR8316894	Third green stage	0.254
	SRR8316900	Third green stage	0.354
	SRR8316901	Third green stage	0.201
	SRR8316898	Complete white stage	0.486
	SRR8316899	Complete white stage	0.494
	SRR8316903	Complete white stage	0.412
	SRR8316902	Silver flowering stage	0.417
	SRR8316904	Silver flowering stage	0.205
	SRR8316905	Silver flowering stage	0.110
	SRR8316906	Gold flowering stage	0.415
	SRR8316907	Gold flowering stage	0.205
	SRR8316908	Gold flowering stage	0.338
SRP132670	SRR6706286	Control	0.377
	SRR6706287	Light intensity 50%	0.173
	SRR6706288	Light intensity 20%	0.325
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.575
	CNS0095593	Slightly white alabastrum(diploid) 2	0.795
	CNS0095594	Slightly white alabastrum(diploid) 3	0.371
	CNS0095595	Whole white alabastrum(diploid) 2	0.244
	CNS0095596	Whole white alabastrum(diploid) 3	0.283
	CNS0095597	Whole white alabastrum(diploid) 4	0.344
	CNS0095598	Silvery flower (diploied) 1	0.585
	CNS0095599	Silvery flower (diploied) 2	0.745
	CNS0095600	Silvery flower (diploied) 3	0.193
	CNS0095601	Golden flower (diploid) 1	0.646
	CNS0095602	Golden flower (diploid) 2	0.425
	CNS0095603	Golden flower (diploid) 3	0.492
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.175
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.513
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.657
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.333
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.237
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.749
	CNS0095610	Silvery flower (tetraploid) 1	0.954
	CNS0095611	Silvery flower (tetraploid) 2	1.030
	CNS0095612	Silvery flower (tetraploid) 3	0.399
	CNS0095613	Golden flower (tetraploid) 1	0.363
	CNS0095614	Golden flower (tetraploid) 2	0.424
	CNS0095615	Golden flower (tetraploid) 3	0.332
CRA001975	CRR073297	Stem 1	0.326
	CRR073298	Stem 2	0.272
	CRR073299	Stem 3	0.193
	CRR073300	Leaf 1	0.449
	CRR073301	Leaf 2	0.220
	CRR073302	Leaf 3	0.328
	CRR073303	Juvenile bud 1	0.180
	CRR073304	Juvenile bud 2	0.109
	CRR073305	Juvenile bud 3	0.233
	CRR073306	Third green 1	0.089
	CRR073307	Third green 2	0.004
	CRR073308	Third green 3	0.244
	CRR073309	Second white 1	0.024
	CRR073310	Second white 2	0.081
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.022
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.102
	CRR073315	Gold flowering 1	0.223
	CRR073316	Gold flowering 2	0.215
	CRR073317	Gold flowering 3	0.402
	CRR073318	Tawny withering 1	0.240
	CRR073319	Tawny withering 2	0.152
	CRR073320	Tawny withering 3	0.000