Gene detail

Detail information of GWHGAAZE011869

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	6.293E-136	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	1E-112	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	2E-136	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT3G51550.1	2E-85	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74405355	74406857	+
GWHAAZE00000003	mRNA	74405355	74406857	+
GWHAAZE00000003	exon	74405355	74406857	+
GWHAAZE00000003	CDS	74405355	74406857	+

Transcript Sequence
>GWHTAAZE011881 ATGGTTGTTACTCAAGTTTCGATTCTACTCGTCTTCGTCTCTATCTTCTTCCTCCATAATCTATCGTTCAGCTACGCAAATAAGCTCCCAACTCCATATTCCCCTGTCGAAAACAGTCCCGTCGAAAACAAGTACTTATTCCCCGAGCCATCGACTCCAAGGCCACGGAAATGGTTGACTTTTGGCCGGGGGAACACAATTGCAACTTGTTTGATACTCGTAATCACACTGCTAAATATTATTGTCTTTAAGTTGCGGGAAATTCAGGAAGCAAATCTTGATGAGGAAGTAAATTTACCGTCGTCTTTGCCGTCAGAACGATCAGGCCGTCGCTTTTCACTAGCTGAAATCTTACTGGCCACACATAACTTCAGCAACGAATTGGTCCTCGGGAAAGGCGGATTTGGAAAAGTCTACAAAGGGGTCATAGACAACGGAACTGTTACGGTTGCCATTAAGCGGTTGAATCAAATGTCCAAACAAGGAGCACGTGAATTTTGGAACGAAATTGAGATGCTGTCCAAGTTTCGACACAGTCATCTCGTCTCACTAATTGGGTACTGTAAGATTGGGAAAGAGATGATCATCGTGTATGAATACATGGTCAATGGAACCTTAGCCGATCATTTGCACAAAAAAGTTACAAACGGTAGCAGCGGTACTTCGACTCTGTCTTGGGTTCAACGGCTCAAAATTTGCATCGGGGCTGCACGTGGATTGGATTATCTTCATACTGGCACTGGTGTTGTAGAAAGAGTTATACACCGTGATGTGAAGAGCTCAAACATACTACTAGATGAGAATTGGGCGGCTAGGATTTCAGACTTTGGCATGTCTAAGATCGGTCCTGTTAATACGACATTCACCCACGTAAGTACTAACGTCAAAGGCACATTTGGTTACTTGGATCCGGAATATTTCCTGACCAGCAAGTTAACTAGGAAATCCGATGTTTATTCCTTTGGGGTTGTATTGTTTGAGGTGTTGTGCGGGAGACCGGTCATTGATTCTAGACTTGATCATGAGCAACGGGGACTTGCTGGATGGGCTCATCAAAACATGAAGGAAGGGACACTACATCAAATTATTGACCCACACTTGACAGGGCAAATCTTGCCCGATTCGTTGAAAACGTTTGCACAAATAGCGGATCAATGCCTGCATATGTTTTCGAAAAACCGTCCCACAATGGCCGAGGTTGTAGTCTCACTTGAGCTTGCTTTGGCATTGCAAGAGAGAGTAGATTCTTTTGTTTTTGAGGATTTTTTCACTGAAAACCAAGAGAATTCGATTTCTGTTTTGGAAAATGAAGGCACTGCCAATCTTCAAAACAATTTGCAACCGCAGGACCAAATGGATGAGATTACACAGCGAGGTGATGCAAGAAACGAACATCCTCGTGAAAAGCCCGTCAAGAAAACGGCATTGACTAGGATCGTACGGCAGGCTTTACTGGGAACAGCTCGGGTGATCTCAGGTAAATCAGAATTCCTAACATTTTGA

Network for GWHGAAZE011869

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	129	403	1.40E-49

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.417
	SRR3591706	second leaf	1.072
	SRR3591707	mature leaf	1.325
	SRR3591708	Shoot apex	3.851
	SRR3591709	Stem	4.512
	SRR3591710	White floral bud	1.060
	SRR3591711	White flower	0.568
	SRR3591712	Green floral bud	0.863
	SRR3591713	Yellow flower	0.248
SRP173429	SRR8316895	Juvenile bud stage	1.148
	SRR8316896	Juvenile bud stage	1.757
	SRR8316897	Juvenile bud stage	0.662
	SRR8316894	Third green stage	0.525
	SRR8316900	Third green stage	1.324
	SRR8316901	Third green stage	0.734
	SRR8316898	Complete white stage	0.216
	SRR8316899	Complete white stage	2.525
	SRR8316903	Complete white stage	0.316
	SRR8316902	Silver flowering stage	0.143
	SRR8316904	Silver flowering stage	0.183
	SRR8316905	Silver flowering stage	0.233
	SRR8316906	Gold flowering stage	0.939
	SRR8316907	Gold flowering stage	0.706
	SRR8316908	Gold flowering stage	0.798
SRP132670	SRR6706286	Control	2.372
	SRR6706287	Light intensity 50%	2.104
	SRR6706288	Light intensity 20%	1.284
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.617
	CNS0095593	Slightly white alabastrum(diploid) 2	2.899
	CNS0095594	Slightly white alabastrum(diploid) 3	2.626
	CNS0095595	Whole white alabastrum(diploid) 2	1.092
	CNS0095596	Whole white alabastrum(diploid) 3	0.660
	CNS0095597	Whole white alabastrum(diploid) 4	1.183
	CNS0095598	Silvery flower (diploied) 1	3.935
	CNS0095599	Silvery flower (diploied) 2	3.587
	CNS0095600	Silvery flower (diploied) 3	0.986
	CNS0095601	Golden flower (diploid) 1	2.678
	CNS0095602	Golden flower (diploid) 2	1.925
	CNS0095603	Golden flower (diploid) 3	1.617
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.996
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.609
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.087
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.242
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.161
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.250
	CNS0095610	Silvery flower (tetraploid) 1	0.716
	CNS0095611	Silvery flower (tetraploid) 2	0.345
	CNS0095612	Silvery flower (tetraploid) 3	0.683
	CNS0095613	Golden flower (tetraploid) 1	0.451
	CNS0095614	Golden flower (tetraploid) 2	1.051
	CNS0095615	Golden flower (tetraploid) 3	0.132
CRA001975	CRR073297	Stem 1	1.478
	CRR073298	Stem 2	1.190
	CRR073299	Stem 3	0.555
	CRR073300	Leaf 1	0.930
	CRR073301	Leaf 2	0.802
	CRR073302	Leaf 3	0.398
	CRR073303	Juvenile bud 1	0.224
	CRR073304	Juvenile bud 2	0.350
	CRR073305	Juvenile bud 3	0.384
	CRR073306	Third green 1	0.153
	CRR073307	Third green 2	0.026
	CRR073308	Third green 3	0.226
	CRR073309	Second white 1	0.053
	CRR073310	Second white 2	0.046
	CRR073311	Second white 3	0.027
	CRR073312	Silver flowering 1	0.370
	CRR073313	Silver flowering 2	0.087
	CRR073314	Silver flowering 3	0.223
	CRR073315	Gold flowering 1	1.425
	CRR073316	Gold flowering 2	0.942
	CRR073317	Gold flowering 3	2.431
	CRR073318	Tawny withering 1	4.280
	CRR073319	Tawny withering 2	4.279
	CRR073320	Tawny withering 3	2.355