Gene detail

Detail information of GWHGAAZE011863

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97049.1	4.0323E-163	unnamed protein product [Coffea canephora]
Swissprot	tr\|C0LGK4\|Y2165_ARATH	7E-136	Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (Precursor)
trEMBL	tr\|A0A068TM84\|A0A068TM84_COFCA	2E-163	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97049.1}
TAIR10	AT2G16250.1	8E-120	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74314903	74321570	+
GWHAAZE00000003	mRNA	74314903	74321570	+
GWHAAZE00000003	exon	74314903	74315795	+
GWHAAZE00000003	exon	74315891	74316369	+
GWHAAZE00000003	exon	74316586	74317159	+
GWHAAZE00000003	exon	74319522	74319650	+
GWHAAZE00000003	exon	74320052	74320074	+
GWHAAZE00000003	exon	74321164	74321570	+
GWHAAZE00000003	CDS	74314903	74315795	+
GWHAAZE00000003	CDS	74315891	74316369	+
GWHAAZE00000003	CDS	74316586	74317159	+
GWHAAZE00000003	CDS	74319522	74319650	+
GWHAAZE00000003	CDS	74320052	74320074	+
GWHAAZE00000003	CDS	74321164	74321570	+

Transcript Sequence
>GWHTAAZE011875 ATGGTTGTTACTCGAGTTTCGATTCTACTCGTCTTCGTCTCCATCTTCTTCATCCATAATACATTTTTTAGCTATGCAAATAAGCTCACAACTCCAAATTCCCCAATTGAAAACCTTCCTAACAAGTACTTATACACCGAGCCATCAACTCCAAAACCGCGAAAATGGGTGACTTTTGGCTGGGGGAACACGATTGCAACTGGTTTGATACTCGTAATCACACTGTTAAATATCATTGTTTATAAGTTGAGGGAAATTCAGGAATCAAATCTTGACGAGGAACTAAACTTACCGTCATCATTGCCGTCAGAACGGTCATGTCGTCGCTTTTCACTAGCCGAAATCTTATTGGCTACACATAACTTTAGCGATGAATTGGTCCTTGGGCGAGGTGGATTTGGAAAAGTGTACAAAGGGGTTATTGACAATGGGACAGTTACAGTTGCCATTAAGCGGTTGAATCATATGTCCAAACAAGGATCGCGCGAATTCTGGAACGAAATCGAGATGTTGTCCAAGTTTCGACATAGTCATCTTGTCTCGCTAATTGGGTATTGTAACGTTGGGAAAGAGAAGATTATTGTTTATGAATACATGGTCAACGGAACCTTAGCCGATCATTTGCACAAAAAAGGTACAAATGGTAGCAGCGGTAATTCGACTCTATCTTGGGTTCAACGGCTCAAAATTTGCATTGGAGCTGCACATGGATTGGACTATCTTCATACTGGCACAGGTGTTATAGATAGAGTTATACATCGTGATGTGAAGAGTTCAAACATACTACTGGATGCGAACTTTGCAGCTAGGATTTCAGACTTTGGGATGTCTAAGATAGGTCCGGCTAATACAACAATTACCAATGTAAGTACTAATGTCAAAGGAACATTCGGACCGGTCATCGATTTGAGACTTGATGATGAGCAAAAGGGACTTGCCGGATGGGCTCAACAAAACGTCAGAGAAGGGACACTTGATCAAATTATCGACCGGAGGTTGAGTGGGCAAATCTTGCCCGATTCGTTGAAAACATTTGCTCAAATAGCGGATCAATGCTTGCATATGTTTTCAAAAAACCGTCCCACAATGGCTGAGGTTGTAGTCTCGCTTGAGCTTGCGTTGGCATTGCAAGATAGAGTAGAATATTCTTTTGATTTTGGGGAATTTTTGACTGAAAACCAAGAGAATTTGGATTCTCCTTTGGAAAATGAAGGCATTACCAATCTTCAAAATGATTTGCAACAGCAGGACCAAATGGGTGAGATTATACAGCCAGGTGATGCAAGAAATGAACATCCTCATGCAAAGCCCATCAAGAAAACAGTGTTGACTAGGATCTTACAGCAGGCTTTTACGGCTCGAGTGATCTCAGGCCATAGTGATCCAAAAAAGTCGTCAAAGAACAGCAAAAGTAGCATAAAGAAGGTCAGGAAGAACAAGGCATTTCCAAGCAAAGATGTACATGTTGCCCCCGGGGCTCTTCCGAGTGGGCAAATAACAACTTCATTTTTAGGAGAAGTATTTACATATCAGCAGATTCTACAAGCCACAGGTGAATTCAATAATATAAACCTCCTTAAAAATGGCCATTCAGGTGGCCTATTCCGGGGTATCCTGGAAGGTGGGGTTCCTGTAGTGATCAAAAGGATTGATTTGGGTTCTGTCAAGAAGGAACCTTACATGCTCGAGTTGGATGCTTTCAATAAGGTTTCTCATTCCAGATTTGTCCCCCTCCTAGGGCATTGCATGGAAAATGAGAATGAGAAGTTTCTGATTTACAAATATATGGCGAATGGGGATTTGTCAAGTTCTTTATTTAGGAAAACCAATTTTGAGGATGATACATTATCGTCATTGGACTGGATAACGAGGCTAAAAATTGCTATAGGAGTGGCAGAGGGTCTGTCTTATCTGCATCATGAATGTACTCCACCCCTTGTTCACAGCGATGTTCAAGCCAGCAGTATACTTCTCGATGAAAAATTTGAAGTGTGCTTAGGGAGCCTAAGCGGGGTCTGTGCTCAAGAAGAGGATGCTCATCAAATCAGGATTACAAAATTATTGCGGTTGCCACAGTCATCTAAACAAAGTGCTCCAGTTACACCTGCGTTAACATGTGCGCACGATGTTTACTGCTTCGGGAAGGTGTTGCTGGAGCTGGTAACAGGAGAACTCGGTATCAGCGCATCGACTGATGGTACCACCGAGTGGCTGCAGCAGACAATACATTGTATAAGCATATCGGACAAGGAACTGGTGACCAAAATTGTGGACCCATCTCTACTGATAGACGATGATTTGTTTGAGGAAGTGTGGGCCATGGCTGTCCTAGCTAAGTCCTGCCTCAATCCCAAGCCTTCGAGGCGGCCCCTCATGAAATATATCCTTAAAGCTCTTGAAAATCCTGTCATGGTAGTGAGAGAAGAGGACATCAGCAGCACCACTAATTCAGCAAGGCTTAGCATTAATTCATCTCTAATAGAAGAGGATTCTTTCTCTTTTTAA

Network for GWHGAAZE011863

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	127	280	2.50E-33
PF07714.18	PK_Tyr_Ser-Thr	524	798	1.90E-19

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XIV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.075
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.082
	SRR3591712	Green floral bud	0.016
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.017
	SRR8316896	Juvenile bud stage	0.103
	SRR8316897	Juvenile bud stage	0.092
	SRR8316894	Third green stage	0.050
	SRR8316900	Third green stage	0.009
	SRR8316901	Third green stage	0.021
	SRR8316898	Complete white stage	0.102
	SRR8316899	Complete white stage	0.040
	SRR8316903	Complete white stage	0.127
	SRR8316902	Silver flowering stage	0.048
	SRR8316904	Silver flowering stage	0.019
	SRR8316905	Silver flowering stage	0.133
	SRR8316906	Gold flowering stage	0.208
	SRR8316907	Gold flowering stage	0.132
	SRR8316908	Gold flowering stage	0.047
SRP132670	SRR6706286	Control	0.427
	SRR6706287	Light intensity 50%	0.464
	SRR6706288	Light intensity 20%	0.212
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.060
	CNS0095593	Slightly white alabastrum(diploid) 2	0.140
	CNS0095594	Slightly white alabastrum(diploid) 3	0.034
	CNS0095595	Whole white alabastrum(diploid) 2	0.164
	CNS0095596	Whole white alabastrum(diploid) 3	0.012
	CNS0095597	Whole white alabastrum(diploid) 4	0.140
	CNS0095598	Silvery flower (diploied) 1	0.001
	CNS0095599	Silvery flower (diploied) 2	0.198
	CNS0095600	Silvery flower (diploied) 3	0.083
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.081
	CNS0095603	Golden flower (diploid) 3	0.068
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.097
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.135
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.099
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.018
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.180
	CNS0095610	Silvery flower (tetraploid) 1	0.082
	CNS0095611	Silvery flower (tetraploid) 2	0.100
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.056
	CNS0095614	Golden flower (tetraploid) 2	0.023
	CNS0095615	Golden flower (tetraploid) 3	0.027
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.042
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.061
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.035
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.063
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.020
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.063
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.255
	CRR073319	Tawny withering 2	0.876
	CRR073320	Tawny withering 3	0.134