Gene detail

Detail information of GWHGAAZE011861

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97049.1	1.1515E-158	unnamed protein product [Coffea canephora]
Swissprot	tr\|C0LGK4\|Y2165_ARATH	8E-130	Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (Precursor)
trEMBL	tr\|A0A068TM84\|A0A068TM84_COFCA	4E-159	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97049.1}
TAIR10	AT2G16250.1	2E-115	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74289504	74294763	+
GWHAAZE00000003	mRNA	74289504	74294763	+
GWHAAZE00000003	exon	74289504	74290977	+
GWHAAZE00000003	exon	74291194	74291767	+
GWHAAZE00000003	exon	74292754	74292864	+
GWHAAZE00000003	exon	74293262	74293284	+
GWHAAZE00000003	exon	74294354	74294763	+
GWHAAZE00000003	CDS	74289504	74290977	+
GWHAAZE00000003	CDS	74291194	74291767	+
GWHAAZE00000003	CDS	74292754	74292864	+
GWHAAZE00000003	CDS	74293262	74293284	+
GWHAAZE00000003	CDS	74294354	74294763	+

Transcript Sequence
>GWHTAAZE011873 ATGGTTGTTACTCGAGTTTCGATTCTACTCGTCTTCGTCTCCATCTTCTTCATCCATAATACATTTTTTAGCTATGCAAATAAGCTCACAACTCCAAATTCCCCAATTGAAAACATCCCTGTATATAACAAGTACTTATACCCCGAGCCATCGACTCCAAAACCACGGAAATGGGTGACTTTTGGCTGGGGGAACACGATTGCAACTGGTTTGATACTTGTAATCACACTGTTAAATATCATTGTTTATAAGTTGAGGGAAATTCAGGAATCAAATCTTGACGAGGAACTAAACTTGCCGTCATCATTGCCATCAGAACGGTCATGCCGTCGCTTTTCACTAGCCGAAATCTTACTGGCCACACATAACTTTAGCGATGAATTGGTCCTCGGGCGAGGCGGATTTGGAAAAGTGTACAAAGGGGTTATTGACAATGGGACAGTTACGGTTGCCATTAAGCGGTTGAATCATATGTCCAAACAAGGATCACGCGAATTCTGGAACGAAATTGAGATGCTGTCCAAGTTTCGACACAGTCATCTCGTCTCCCTAATTGGGTATTGTAACGTTGGGAAAGAGAAGATTATTGTTTATGAATACATGGTCAACGGAACCTTAGCCGATCATTTGCACAAAAAAGGTACAAATGGTAGCAGTGGTAATTCGACTCTATCTTGGGTTCAACGGCTCAAAATTTGCATAGGGGCTGCACATGGATTGGACTATCTTCATACCGGCACAGGTGTTATAGATAGAGTTATACATCGTGATGTGAAGAGTTCAAACATACTACTAGATGCGAATTTTGCGGCTAGGATTTCAGACTTTGGGATGTCTAAGATAGGTCCAGCTAATACAACAATTACCCATGTAAGTACTAACGTCAAAGGAACATTCGGGTACGTGGATCCGGAATATTTCTTGACCCGTAAGTTGACTAGGAAATCAGACGTTTATTCCTTTGGGGTTGTATTGTTCGAAGTGTTATGTGGGAGACCGGTCATCGATTTGAGACTTGATGATGAGCAAAAGGGACTTGCCGGATGGGCTCAACAAAACGTCAAAGAAGGGACACTTGATCAAATTATCGACCGGAGCTTGAGTGGGCAAATCTTGCCCGATTCGTTGAAAACATTTGCTCAAATAGCGGATCACTGCTTGCATATGTTTTCAAAAAACCGTCCTACAATGGCTGAGGTTGTAGTTTCGCTTGAGCTTGCGTTGGCATTGCAAGAGAGAGTAGAATATTCTTTTGATTTTGGGGAATTTTTGACTGAAAACCAAGAGAATTCGGATTCTCCTTTGGAAAATGAAGGCATTGCCAATCTTCAAAATGATTTGCAACAGCAGGACCAAATGGGTGAGATTATAGAGCCAGGTGATGCAAGAAACGAACATCCCCATGCAAAGCCCATCAAGAAAACAGTGTTGACTAGGATCTTACAGCAGGCTTTTATGGCTCGAGTGATCTCAGGCCATAGTGATCCAAAAAAGTCGTCAAAGAACAGCAAAAGTAGCATAAAGAAGGTCAGGAAGAACAAGGCATTTCCAAGCAAAGATGTACATGTTGCCCCCGGGGCTCTTCCGAGTGGGCAAATAACAACTTCATTTTTAGGAGAAGTATTTACATATCAGCAGATTCTACAAGCCACAGGTGAATTCAATAATATAAACCTCCTTAAAAATGGCCATTCAGGTGATCTATTCCGGGGTATCCTGGAAGGTGGGGTTCCTGTAGTGATCAAAGGGATTGATTTGGGTTCTGTCAAGAAGGAACCTTACATGCTCGAGTTGGATGCTTTCAATAAGGTTTCTCATTCCAGATTTGTCCCCCTCCTAGGGCATTGCATGGAAAATGAGAATGAGAAGTTTCTGATTTACAAATATATGCCAAATGGGGATTTGTCAAGTTCTTTATTTAGGAAAACCAATTTTGAGGATGATACGTTATCGTCATTGGACTGGATAACGAGGCTAAAAATTGCTATAGGAGTGGCAGAGGGTCTGTCTTATCTGCATCATGAATGTACTCCACCCCTTGTTCACAGTATACTTCTTGATGAAAAATTTGAAGGGCGCTTAGGGAGCCTAAGCGGGGTCTGTGCTCAAGAAGAGGATGCTCATCAAATCAGGATTACTAATTTATTGCGGTTGCCACAGTCATCTAAACAAAGTGCTCCAGTTACACCTGCGTTAACATGTGCGCACGATGTTTACTGCTTCGGGAAGGTGTTGCTGGAGCTGGTAACAGGAGAACTCGGTATCAGCGCATCGACTGATGGTACCACGAAGGAGTGGCTGGAGCAGACAATACATTGTATAAGCATATTGGACAAGGAACTGGTGACCAAAATTGTGGACCCATCTCTAGTCATAGACGAGGATTTGTTAGAGGAAGTGTGGGCCATGGCTATCGTAGCTAAGTCCTGCCTCAATCCCAAGCCTTCGAGGCGGCCCCCCATGAAGTATATCCTTAAAGCTCTTGAAAATCCTGTCAGGGTAGTGAGAGAAGAGGACATCAGCCGCAGCACTAATCCAGGAAGGCTTAGCATTAATTCATCTCTAATAGAAGAGGATTCTTTCTCTTTTTAA

Network for GWHGAAZE011861

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	129	403	7.50E-48
PF07714.18	PK_Tyr_Ser-Thr	558	826	9.30E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XIV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.152
	SRR3591706	second leaf	0.033
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.109
	SRR3591710	White floral bud	0.037
	SRR3591711	White flower	0.110
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.039
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.103
	SRR8316897	Juvenile bud stage	0.006
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.056
	SRR8316901	Third green stage	0.066
	SRR8316898	Complete white stage	0.074
	SRR8316899	Complete white stage	0.239
	SRR8316903	Complete white stage	0.103
	SRR8316902	Silver flowering stage	0.095
	SRR8316904	Silver flowering stage	0.089
	SRR8316905	Silver flowering stage	0.013
	SRR8316906	Gold flowering stage	0.138
	SRR8316907	Gold flowering stage	0.180
	SRR8316908	Gold flowering stage	0.148
SRP132670	SRR6706286	Control	0.268
	SRR6706287	Light intensity 50%	0.164
	SRR6706288	Light intensity 20%	0.099
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.085
	CNS0095593	Slightly white alabastrum(diploid) 2	0.342
	CNS0095594	Slightly white alabastrum(diploid) 3	0.168
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.096
	CNS0095597	Whole white alabastrum(diploid) 4	0.030
	CNS0095598	Silvery flower (diploied) 1	0.053
	CNS0095599	Silvery flower (diploied) 2	0.041
	CNS0095600	Silvery flower (diploied) 3	0.031
	CNS0095601	Golden flower (diploid) 1	0.109
	CNS0095602	Golden flower (diploid) 2	0.037
	CNS0095603	Golden flower (diploid) 3	0.067
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.093
	CNS0095614	Golden flower (tetraploid) 2	0.029
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.049
	CRR073298	Stem 2	0.030
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.036
	CRR073301	Leaf 2	0.106
	CRR073302	Leaf 3	0.023
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.014
	CRR073305	Juvenile bud 3	0.005
	CRR073306	Third green 1	0.034
	CRR073307	Third green 2	0.037
	CRR073308	Third green 3	0.018
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.407
	CRR073319	Tawny withering 2	0.499
	CRR073320	Tawny withering 3	0.064