Gene detail

Detail information of GWHGAAZE011859

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354974.1	0	PREDICTED: receptor-like protein kinase FERONIA-like [Solanum tuberosum]
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	1E-110	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|M1APN7\|M1APN7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400027429}
TAIR10	AT3G51550.1	3E-96	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74263112	74272496	+
GWHAAZE00000003	mRNA	74263112	74272496	+
GWHAAZE00000003	exon	74263112	74264531	+
GWHAAZE00000003	exon	74265984	74266318	+
GWHAAZE00000003	exon	74267863	74268010	+
GWHAAZE00000003	exon	74268805	74268941	+
GWHAAZE00000003	exon	74269044	74269170	+
GWHAAZE00000003	exon	74271961	74272496	+
GWHAAZE00000003	CDS	74263112	74264531	+
GWHAAZE00000003	CDS	74265984	74266318	+
GWHAAZE00000003	CDS	74267863	74268010	+
GWHAAZE00000003	CDS	74268805	74268941	+
GWHAAZE00000003	CDS	74269044	74269170	+
GWHAAZE00000003	CDS	74271961	74272496	+

Transcript Sequence
>GWHTAAZE011871 ATGATTACCTTTGCTGTTGATTTTCCCACTCCTAATTCCCCTGCAGCTTACGAATGCCGTTGTTTGGACAAAAATCTTGCTAACACGAACTCTGTGCTTTGGAAATTATTGTTAGCTTTTGGCCGTCGAAATGCAATTGCTACTGTTGTGATAATCTTAATCACCCTATTGAATATCGCTGTTTATAAGCTGCGGAAGCTTCATGAAGCAAATCTTTATGATAAATTAAATGAAAAGCCATCATTGACGTCAGAACAGTTATGTCGGCGCTTTTCACTTTTTGATATCATATCGGCGACCAACAACTTTGATGATGCATTAATCATTGGGCAGGGTGGATTTGGGAAGGTTTATAAGGGGATCATGGATGATGGAGCAATTACTGTTGCCATTAAGCGGTTGAATCCCATGTCAAAGCAAGGAGCTCCCGAATTTTGGACAGAGATTGATATGCTCTCCAAAATTCGACACAGTCATATCGTCTCACTAATTGGTTATTGCGATAGCCATGATGAGATGATCCTTATTTATGAATATATGGTCCGTGGGACACTTGCTGAGCATCTGTATACAACTGGTAAAGATGGTAGGACTTTTACTCCCACTCTATCTTGGGTGCAACGCCTTAAGATTTGCATTGGGGCGGCACATGGTTTGGATTACCTTCATACTGGTACGGGAATCAAACATAGAGTCATACACCGTGATGTGAAGAGCTCTAACATTTTGTTGGATGAGAATTGGGCAGCTAAGATTTCAGACTTCGGATTATCTAAAATTGGCCCCACAAGTCATTCTTGCAGCCAAGTTAGCACTAAAGTTAAAGGCACATTTGGGTATTTGGATCCGGAGTATTTCTTGACGCACAGGCTGACAAGGAAATCTGACGTTTACGCCTTTGGGGTTGTATTGTTTGAAGTGTTGTGTGGGCGGCGAGCTTTGGATGTCAGACTTGATGTGGAGCAACGAGGTCTTGCTGGATGGGCCCAAAACTGCATTAAAGAAGGAATGTTGGATCGGATTATCGATCCTTTTCTGAGGGGAGAAATCTCTTCGAATTCTTTGTCGACGTTTGTGCAAATTGCGGATCAATGCTTGCATATTTTTTCAAAAAAACGCCCTTCTGTGTCCGAGGTCGTTGCTTCACTTGAGAGTGCCTTAGCACTTCAAGAGAGAGAGGACTCTGCCATGTTCAATGAGAATATTTTTACTGCAAGCGGGGTTTATGACCTCCAAAAGAAAATAGATTCTTCAATTGAAAAACAGGAGCTTATGAATGACGGTAACGGTGGGCTTCACAACGATATTATACAATTGGGTGATACAAGCGGCGGCCCATCTCGTGTAAAGACTGCCAAGATAATGACATTTAGAAGGATGGTGCATTTCCTTTTTTTGGGCATACCACGGATGAACTCAGTCCATAGTGATCCAAAAAGGCTGTCAAAGAACAGCATAAACAGCAAAAAGAAGGGCAGGAAGGACAAGGCATTTCCAAGCAAAGATGCGGATGTTGTCCCGCAGGTGCCTCCGAGTGGTCAAATATCAACGTCAGATTTGAAAATTTTCACATTGGATGAGTTGAAAACTGCGACCAGGAACTTCAACACGCTGTTGGGCAAGGGAGATCTTGGAGATATTTTCTTAGGCTGGGTTAATGAAGTTACATACGCCCCATCATTGGTCGGTGTCGGAATGGCCATTGCTGTTAAGAAATTAGATCCAAGAGACTTTCAACGACATTCAGGAGGGCAGATAGAGTTGCGATTGTTGGGAAGGGTTAGTCATCCCAATCTTGCTAGCATACGGGGATACTGCATGGAAAACCAGGAATTCTTTGTTGTTTACGAATACATGCGGGAGTACATGCAGAACGGAAGTTTAAAAAGCCACCTTTTCAGGGAAGACGTAGAACCACTTTCGTGGTTTACAAGGCTAAAAATAGCTATCGGAGCAGCTCGAGGCCTTGCTTTCTTTCACACAATGGTGAAGGAGGTCATTTACAATCAGTTCCAAACCAGCTGTATATTGTTGGATGGGGATTTTAACGTGAAGCTCTGGAATTTTGAGTTTGCAGGAGCAATCTCCTGCTCACCCTTCACCATATATGTTCCAACACGTCTGACGGGAAAATATTTGTACAGAGATCCGGAGTACTGGACCACTGGTTCCTTGACTATGAAGAGTGACGTCTACGGTTTCGGATTGGTGTTGCTGGAACTACTTACAGGCTTGCCAACGTTTGATAATTATTGGTTCAGGATAAGCAAATATTCTTTTAGGAATAGGAAAGAAGGAGATTTGATATTCGATGAAAGACGGTTGAAGAGATTAATGGACGAACGGCTTAATGGCGAGTACCCTCTTGAAGGTGCGTTACAATATGTCTTGCTCGTGCAAAAATGTCTCGTTGATTTTCGATCCATAAACCGACCAACCATGGAAGAAGTATTGAACACTTTAGAACATATTAATGGCATAAAGATGGATCCAAACGGAAACTCGGCAACAGTGGGTTCGGAATCCAAAGATTTGCAAGGTGATGATAGGTCTACAAAAATACGGAAGGACTTGCTTTCAGTCGAGATGCCGAGGTACCGGTTAGTTGAGAGTTCGCCAAATAGTTATTCAGTTTGCAACGAAGATCCGGAGCCTGAATGTTCATTTCACAATGGCGATATGGAGCTTTCAGGACCACGGTGA

Network for GWHGAAZE011859

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	109	383	1.30E-45
PF07714.18	PK_Tyr_Ser-Thr	536	745	1.00E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.761
	SRR3591706	second leaf	0.238
	SRR3591707	mature leaf	0.618
	SRR3591708	Shoot apex	0.664
	SRR3591709	Stem	1.801
	SRR3591710	White floral bud	1.286
	SRR3591711	White flower	1.359
	SRR3591712	Green floral bud	1.876
	SRR3591713	Yellow flower	0.625
SRP173429	SRR8316895	Juvenile bud stage	1.954
	SRR8316896	Juvenile bud stage	2.995
	SRR8316897	Juvenile bud stage	1.734
	SRR8316894	Third green stage	1.132
	SRR8316900	Third green stage	1.609
	SRR8316901	Third green stage	1.485
	SRR8316898	Complete white stage	0.343
	SRR8316899	Complete white stage	2.756
	SRR8316903	Complete white stage	0.725
	SRR8316902	Silver flowering stage	0.417
	SRR8316904	Silver flowering stage	0.598
	SRR8316905	Silver flowering stage	0.145
	SRR8316906	Gold flowering stage	0.933
	SRR8316907	Gold flowering stage	0.699
	SRR8316908	Gold flowering stage	0.839
SRP132670	SRR6706286	Control	1.660
	SRR6706287	Light intensity 50%	1.973
	SRR6706288	Light intensity 20%	1.466
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.353
	CNS0095593	Slightly white alabastrum(diploid) 2	1.749
	CNS0095594	Slightly white alabastrum(diploid) 3	1.691
	CNS0095595	Whole white alabastrum(diploid) 2	2.183
	CNS0095596	Whole white alabastrum(diploid) 3	2.745
	CNS0095597	Whole white alabastrum(diploid) 4	2.579
	CNS0095598	Silvery flower (diploied) 1	2.353
	CNS0095599	Silvery flower (diploied) 2	2.981
	CNS0095600	Silvery flower (diploied) 3	1.482
	CNS0095601	Golden flower (diploid) 1	2.984
	CNS0095602	Golden flower (diploid) 2	3.820
	CNS0095603	Golden flower (diploid) 3	3.222
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.530
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.745
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.952
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.293
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.967
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.522
	CNS0095610	Silvery flower (tetraploid) 1	0.638
	CNS0095611	Silvery flower (tetraploid) 2	0.441
	CNS0095612	Silvery flower (tetraploid) 3	0.429
	CNS0095613	Golden flower (tetraploid) 1	0.348
	CNS0095614	Golden flower (tetraploid) 2	0.531
	CNS0095615	Golden flower (tetraploid) 3	0.558
CRA001975	CRR073297	Stem 1	1.855
	CRR073298	Stem 2	0.838
	CRR073299	Stem 3	0.895
	CRR073300	Leaf 1	0.948
	CRR073301	Leaf 2	0.734
	CRR073302	Leaf 3	1.268
	CRR073303	Juvenile bud 1	1.440
	CRR073304	Juvenile bud 2	0.751
	CRR073305	Juvenile bud 3	0.541
	CRR073306	Third green 1	0.231
	CRR073307	Third green 2	0.407
	CRR073308	Third green 3	1.174
	CRR073309	Second white 1	0.169
	CRR073310	Second white 2	0.134
	CRR073311	Second white 3	0.103
	CRR073312	Silver flowering 1	0.356
	CRR073313	Silver flowering 2	0.683
	CRR073314	Silver flowering 3	0.375
	CRR073315	Gold flowering 1	1.098
	CRR073316	Gold flowering 2	1.573
	CRR073317	Gold flowering 3	0.990
	CRR073318	Tawny withering 1	1.424
	CRR073319	Tawny withering 2	3.080
	CRR073320	Tawny withering 3	1.097