Gene detail

Detail information of GWHGAAZE011856

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002510681.1	8.32842E-98	serine/threonine-protein kinase cx32, putative [Ricinus communis]
Swissprot	tr\|O49840\|APK2B_ARATH	2E-74	Protein kinase 2B, chloroplastic (Precursor)
trEMBL	tr\|B9R8N8\|B9R8N8_RICCO	3E-98	Serine/threonine-protein kinase cx32, putative {ECO:0000313\|EMBL:EEF52868.1}
TAIR10	AT1G76360.1	1E-63	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	74241041	74244818	+
GWHAAZE00000003	mRNA	74241041	74244818	+
GWHAAZE00000003	exon	74241041	74241358	+
GWHAAZE00000003	exon	74241576	74241723	+
GWHAAZE00000003	exon	74242952	74243088	+
GWHAAZE00000003	exon	74243198	74243342	+
GWHAAZE00000003	exon	74244346	74244818	+
GWHAAZE00000003	CDS	74241041	74241358	+
GWHAAZE00000003	CDS	74241576	74241723	+
GWHAAZE00000003	CDS	74242952	74243088	+
GWHAAZE00000003	CDS	74243198	74243342	+
GWHAAZE00000003	CDS	74244346	74244818	+

Transcript Sequence
>GWHTAAZE011868 ATGCCATCAAAGAACAGCAAAAGCAGCAAAAAGAAGGGCAGGAAGAACAAGGCATTTCCAAGCAAAGATGCGGATGTTGTTCCGCAGGTGCCTCCGAGTGGGCAAATATCAACTTCAAATTTGAAAATTTTCACATCAGAGGAGTTGAAAACTGCAACCGGGAACTTCAATATACTGTTGGGCAACAGAGATCTTGGTGATCTTTTCTTAGGCTGGGTTAATGAAGTTACATACGCCCCATCAATGCTCGGTGTTGGAAAAGCCATTGCTGTTGAGAAATTAGATCCAAGAGACTTTCAACGAGATCCAGGATGGCAGATAGAGTTGCAATTCTTGGAAAGATTTAGTCATCCCAATCTTGCTAGTATATGGGGATACTGCATGGAAAACCCGGAATTCTTTGTTGTTTACGAATACATGTGGGAGTACATGCAGAACGGAAGTTTAAAAAGCCACCTTTTCAGGGAGGATGCAGAACCACTTCCATGGTTTACAAGGCTTAAAATGGCCATTGGAGCAGCTCGAGGCCTTGCTTTCTTACACACAACAGTGAAGCAAGTAATTTACCGTCAGTTTAACACCAGTTGCATATTGTTGGATGGGGATTTTAACGCAATGCTCTGGAATTTCGAAATTGCAAAGTTAGCTGGAGTAATCTGCTATTCGCGTGTGTTTATGAATGTTGCAACTTTGGTCACAGAAGATATGGGGAACTATGCGTATATAGATCCTGAGTGCCTGACCACTGGTCACTTGACTATGAAGAGTGACGTCTACGGTTTTGGATTGGTGTTACTAGAACTACTAACAGGCTTGCCGGTGTTCGATGCTCATCGGATGGGGCAAGGCAAATTTTTGGTGAATTGGGTAAGCAATGTCACATTTGACGAAATAAGTCTGCTTAGAGTAGCAGACCCACGGCTTCGTCGCAATTACCCTTTTCAAGGCGTGTTACAATATATATTACTAGTACAAAAATGTCTTGATCAATCCATGAACCGGCCTACCATGGGAGAAGTATTGGACACTTTAGTACATATTGATGGCATAAAGATGGATACAAACGTAAACAGGCCTCCAATGGGTTCAGAAGTTGTAGATTTGGAAGGTGATTGGTTGACAGATATTACAAGAGGACTCGCTTTTGGTCGAGATGCGTTTTTGGTCGAGATGCCGAGGTCATGGGAAGTTGAGAGTTTGCCTAGTTATCTAGGAAGCTAA

Network for GWHGAAZE011856

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	64	271	2.40E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.666
	SRR3591706	second leaf	0.759
	SRR3591707	mature leaf	2.880
	SRR3591708	Shoot apex	2.840
	SRR3591709	Stem	4.021
	SRR3591710	White floral bud	2.870
	SRR3591711	White flower	3.063
	SRR3591712	Green floral bud	2.880
	SRR3591713	Yellow flower	1.503
SRP173429	SRR8316895	Juvenile bud stage	4.596
	SRR8316896	Juvenile bud stage	6.325
	SRR8316897	Juvenile bud stage	3.981
	SRR8316894	Third green stage	1.168
	SRR8316900	Third green stage	4.009
	SRR8316901	Third green stage	3.563
	SRR8316898	Complete white stage	0.534
	SRR8316899	Complete white stage	6.722
	SRR8316903	Complete white stage	1.825
	SRR8316902	Silver flowering stage	1.352
	SRR8316904	Silver flowering stage	1.011
	SRR8316905	Silver flowering stage	0.457
	SRR8316906	Gold flowering stage	2.369
	SRR8316907	Gold flowering stage	2.045
	SRR8316908	Gold flowering stage	2.432
SRP132670	SRR6706286	Control	3.653
	SRR6706287	Light intensity 50%	4.777
	SRR6706288	Light intensity 20%	4.497
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.308
	CNS0095593	Slightly white alabastrum(diploid) 2	3.556
	CNS0095594	Slightly white alabastrum(diploid) 3	5.933
	CNS0095595	Whole white alabastrum(diploid) 2	3.535
	CNS0095596	Whole white alabastrum(diploid) 3	1.471
	CNS0095597	Whole white alabastrum(diploid) 4	2.224
	CNS0095598	Silvery flower (diploied) 1	4.338
	CNS0095599	Silvery flower (diploied) 2	5.306
	CNS0095600	Silvery flower (diploied) 3	3.011
	CNS0095601	Golden flower (diploid) 1	5.271
	CNS0095602	Golden flower (diploid) 2	4.813
	CNS0095603	Golden flower (diploid) 3	4.474
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.486
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.706
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.923
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.167
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.513
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.708
	CNS0095610	Silvery flower (tetraploid) 1	2.313
	CNS0095611	Silvery flower (tetraploid) 2	2.734
	CNS0095612	Silvery flower (tetraploid) 3	1.801
	CNS0095613	Golden flower (tetraploid) 1	1.214
	CNS0095614	Golden flower (tetraploid) 2	2.440
	CNS0095615	Golden flower (tetraploid) 3	0.838
CRA001975	CRR073297	Stem 1	3.958
	CRR073298	Stem 2	3.617
	CRR073299	Stem 3	2.894
	CRR073300	Leaf 1	3.327
	CRR073301	Leaf 2	3.797
	CRR073302	Leaf 3	1.393
	CRR073303	Juvenile bud 1	2.705
	CRR073304	Juvenile bud 2	0.701
	CRR073305	Juvenile bud 3	1.635
	CRR073306	Third green 1	0.038
	CRR073307	Third green 2	0.091
	CRR073308	Third green 3	0.021
	CRR073309	Second white 1	0.285
	CRR073310	Second white 2	0.729
	CRR073311	Second white 3	0.479
	CRR073312	Silver flowering 1	0.192
	CRR073313	Silver flowering 2	0.056
	CRR073314	Silver flowering 3	0.108
	CRR073315	Gold flowering 1	0.806
	CRR073316	Gold flowering 2	1.526
	CRR073317	Gold flowering 3	0.117
	CRR073318	Tawny withering 1	2.396
	CRR073319	Tawny withering 2	5.220
	CRR073320	Tawny withering 3	1.670