Detail information of GWHGAAZE011839


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002277936.10PREDICTED: long chain acyl-CoA synthetase 6, peroxisomal [Vitis vinifera]
Swissprottr|Q8LKS5|LACS7_ARATH0Long chain acyl-CoA synthetase 7, peroxisomal
trEMBLtr|D7T6V1|D7T6V1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI26222.3}
TAIR10AT5G27600.10long-chain acyl-CoA synthetase 7

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene7400401874018039-
GWHAAZE00000003mRNA7400401874018039-
GWHAAZE00000003exon7400401874004116-
GWHAAZE00000003exon7400438974004393-
GWHAAZE00000003exon7400474374004833-
GWHAAZE00000003exon7400682374006908-
GWHAAZE00000003exon7400776774007870-
GWHAAZE00000003exon7400936574009451-
GWHAAZE00000003exon7400955574009678-
GWHAAZE00000003exon7401078974010907-
GWHAAZE00000003exon7401100374011132-
GWHAAZE00000003exon7401240074012488-
GWHAAZE00000003exon7401258074012668-
GWHAAZE00000003exon7401408374014176-
GWHAAZE00000003exon7401428974014368-
GWHAAZE00000003exon7401447074014559-
GWHAAZE00000003exon7401478174014867-
GWHAAZE00000003exon7401495074014994-
GWHAAZE00000003exon7401610074016176-
GWHAAZE00000003exon7401627374016378-
GWHAAZE00000003exon7401739074017471-
GWHAAZE00000003exon7401754774017618-
GWHAAZE00000003exon7401772074017797-
GWHAAZE00000003exon7401787974017939-
GWHAAZE00000003exon7401802474018039-
GWHAAZE00000003CDS7401802474018039-
GWHAAZE00000003CDS7401787974017939-
GWHAAZE00000003CDS7401772074017797-
GWHAAZE00000003CDS7401754774017618-
GWHAAZE00000003CDS7401739074017471-
GWHAAZE00000003CDS7401627374016378-
GWHAAZE00000003CDS7401610074016176-
GWHAAZE00000003CDS7401495074014994-
GWHAAZE00000003CDS7401478174014867-
GWHAAZE00000003CDS7401447074014559-
GWHAAZE00000003CDS7401428974014368-
GWHAAZE00000003CDS7401408374014176-
GWHAAZE00000003CDS7401258074012668-
GWHAAZE00000003CDS7401240074012488-
GWHAAZE00000003CDS7401100374011132-
GWHAAZE00000003CDS7401078974010907-
GWHAAZE00000003CDS7400955574009678-
GWHAAZE00000003CDS7400936574009451-
GWHAAZE00000003CDS7400776774007870-
GWHAAZE00000003CDS7400682374006908-
GWHAAZE00000003CDS7400474374004833-
GWHAAZE00000003CDS7400438974004393-
GWHAAZE00000003CDS7400401874004116-
Transcript Sequence

Network for GWHGAAZE011839

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.29AMP-binding745162.50E-104
PF13193.7AMP-binding_C5265862.10E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01897ACSL, fadD Metabolic pathways map01100
Fatty acid metabolismmap01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Ferroptosismap04216
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.171
SRR3591706second leaf3.703
SRR3591707mature leaf3.018
SRR3591708Shoot apex6.473
SRR3591709Stem23.541
SRR3591710White floral bud11.529
SRR3591711White flower12.168
SRR3591712Green floral bud8.053
SRR3591713Yellow flower9.045
SRP173429 SRR8316895Juvenile bud stage 11.790
SRR8316896Juvenile bud stage 16.782
SRR8316897Juvenile bud stage 5.822
SRR8316894Third green stage 6.269
SRR8316900Third green stage 23.123
SRR8316901Third green stage 17.540
SRR8316898Complete white stage 11.501
SRR8316899Complete white stage 39.484
SRR8316903Complete white stage 15.918
SRR8316902Silver flowering stage3.075
SRR8316904Silver flowering stage4.171
SRR8316905Silver flowering stage1.232
SRR8316906Gold flowering stage 6.242
SRR8316907Gold flowering stage 5.284
SRR8316908Gold flowering stage 4.590
SRP132670SRR6706286Control25.072
SRR6706287Light intensity 50%29.001
SRR6706288Light intensity 20%29.857
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.459
CNS0095593Slightly white alabastrum(diploid) 210.611
CNS0095594Slightly white alabastrum(diploid) 315.976
CNS0095595Whole white alabastrum(diploid) 212.537
CNS0095596Whole white alabastrum(diploid) 310.356
CNS0095597Whole white alabastrum(diploid) 414.069
CNS0095598Silvery flower (diploied) 112.179
CNS0095599Silvery flower (diploied) 213.138
CNS0095600Silvery flower (diploied) 312.272
CNS0095601Golden flower (diploid) 112.806
CNS0095602Golden flower (diploid) 213.391
CNS0095603Golden flower (diploid) 311.505
CNS0095604Slightly white alabastrum(tetraploid) 19.003
CNS0095605Slightly white alabastrum(tetraploid) 27.126
CNS0095606Slightly white alabastrum(tetraploid) 311.882
CNS0095607Whole white alabastrum(tetraploid) 17.374
CNS0095608Whole white alabastrum(tetraploid) 26.647
CNS0095609Whole white alabastrum(tetraploid) 317.545
CNS0095610Silvery flower (tetraploid) 113.555
CNS0095611Silvery flower (tetraploid) 214.166
CNS0095612Silvery flower (tetraploid) 311.432
CNS0095613Golden flower (tetraploid) 14.795
CNS0095614Golden flower (tetraploid) 210.816
CNS0095615Golden flower (tetraploid) 37.029
CRA001975CRR073297Stem 113.574
CRR073298Stem 211.568
CRR073299Stem 310.026
CRR073300Leaf 123.808
CRR073301Leaf 218.897
CRR073302Leaf 318.112
CRR073303Juvenile bud 125.170
CRR073304Juvenile bud 218.308
CRR073305Juvenile bud 326.809
CRR073306Third green 16.705
CRR073307Third green 25.129
CRR073308Third green 37.677
CRR073309Second white 11.958
CRR073310Second white 23.218
CRR073311Second white 32.625
CRR073312Silver flowering 12.347
CRR073313Silver flowering 21.346
CRR073314Silver flowering 31.864
CRR073315Gold flowering 13.973
CRR073316Gold flowering 23.931
CRR073317Gold flowering 35.429
CRR073318Tawny withering 11.935
CRR073319Tawny withering 21.548
CRR073320Tawny withering 32.422