Gene detail

Detail information of GWHGAAZE011825

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007034741.1	Primary amine oxidase [Theobroma cacao]
Swissprot	tr\|Q43077\|AMO_PEA	Primary amine oxidase (Precursor)
trEMBL	tr\|A0A061EMU7\|A0A061EMU7_THECC	Amine oxidase {ECO:0000256\|RuleBase:RU000672}
TAIR10	AT1G31690.1	Copper amine oxidase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	73765834	73773365	+
GWHAAZE00000003	mRNA	73765834	73773365	+
GWHAAZE00000003	exon	73765834	73765961	+
GWHAAZE00000003	exon	73766300	73766590	+
GWHAAZE00000003	exon	73770334	73770643	+
GWHAAZE00000003	exon	73771287	73771400	+
GWHAAZE00000003	exon	73772173	73772711	+
GWHAAZE00000003	exon	73773158	73773365	+
GWHAAZE00000003	CDS	73765834	73765961	+
GWHAAZE00000003	CDS	73766300	73766590	+
GWHAAZE00000003	CDS	73770334	73770643	+
GWHAAZE00000003	CDS	73771287	73771400	+
GWHAAZE00000003	CDS	73772173	73772711	+
GWHAAZE00000003	CDS	73773158	73773365	+

Transcript Sequence
>GWHTAAZE011837 ATGCTCACATTTGAGGAACAAATCGCCGCTAATAACCTCACGGTAACATACGCACCTTTCGTGGCGTCGGTTAGCAAGAGAGGGCTTAATTTAGCAGAAGTTGCCTGCGGAAGTTTTACCGTGGGGTGGTATGGTAAAAAGGAGAGGAGTGAGAGGAGGATAGTTAAAGTTATGTGTTATTATTTGGATGGGACCGTGAATTTATATATGAGGCCTATTGAAGGGATCACGGTGACCGTTGATCTTGAGAAAATGAAAGTTGTGGAGTTTTCTGATAGGATTATTGTGCCGGTGCCGGATGGGAAAGGAACGGATTATCGATGGTCAGAGCAGAGGCCACCATTTGCTCCACGGGTTAAGGGGATCACGACGGTACAACCAGATGGACATAGTTTTAGTATCGATGGACATACTATTAAGTGGGCTAATTGGGCCTTTCATCTATCATTTGACATGCGAGTAGGCCCGATTATAACATCAGCACAAATCTTTGATATTGACAAGAATGAATATCGTAGTGTTATGTACAAAGGGTTCATTTCTGAGCTCTTGGTGCCCTACATGGATCTAACTGAAGAATGGTACTATCGGACCTTCTTTGATGCTGGTGAATATGGGTTTGGTCTATGTGCGGTCCAGCTCGAACCAGAACGAGATTGTCCAGCAAATGCGGTGTTCATGGATGGGTATTTTAGTGGGTTAGATGGGTCTCCCGGCACTATAAAAAACGTAAGAGAGGCTCGACCAGATGTGAGCTTGGTGGTGAGGATGGTGTCGGCTGTGGGTAACTATGATTACATTGTTGATTGGGAATTCAAGCAGGCTGGATCAATCAAGGCCACAATTGGGCTATCTGGATTGCTAGAAGTGAGGGGATCAACATACACCCACATTGACCAAATACAAGAGGAACAATACGGTACATTGTTAGCACGCAACACTTTGGGTGCGTACCACGATCACTTCTTAACCTACCACCTTGATCTCGATGTGGACGGTGATGCTAACTCCTTTGTAAAAACCAAATTGCAAACAAAACGTGTGACTGATCACAGATCACCGAGAAAGAGTTATTGGACGGTTGTGAGTGAAACGGCTAAAACAGAGTCTGATGCAAGGATTCATCTCGGCTCTAAACCGGTCGAGCTAGCAGTTGTGAATCCTAATAAAAAGACTAAAGTGGGGAACAATGTTGGTTACCGTTTGATCCCCGGGGCCGTGGCAGGCCCCCTTTTAACGGACGATGATTACCCGCAAATCCGTGGAGCCTTTACTAAGTATCATGTGTGGGTGACACAGTATAACAGATCAGAACAATATGCTGGAGGGGTTTATGTTGATCAAAGCCAAGGGGATGATACTTTAGCTCAGTGGAGCCACAGAAATAGGGAAATTGAGAACAAGGACATAGTGTTATGGTACACATTAGGGTTTCACCACGTACCTTGCCAAGAGGATTTTCCAATTATGCCTACCTTGAGCAGCGGGTTTGAGCTCCGACCCACAAATTTCTTTGAGCAAAATCCAGTCCTCAAAGTGAAGCCTCCTAAACATGTGATTTGGCCTAATTGTTCAGCAGTAGTAGATTGA

Network for GWHGAAZE011825

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02728.17	Cu_amine_oxidN3	1	99	4.10E-21
PF01179.21	Cu_amine_oxid	123	244	1.70E-31
PF01179.21	Cu_amine_oxid	245	514	2.00E-89

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00276	AOC3, AOC2, tynA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycine, serine and threonine metabolism	map00260
		Tyrosine metabolism	map00350
		Phenylalanine metabolism	map00360
		beta-Alanine metabolism	map00410
		Isoquinoline alkaloid biosynthesis	map00950
		Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

GO term	Ontology	Name
GO:0009308	biological_process	amine metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005507	molecular_function	copper ion binding
GO:0008131	molecular_function	primary amine oxidase activity
GO:0048038	molecular_function	quinone binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.132
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.046
	SRR3591710	White floral bud	0.040
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.030
	SRR3591713	Yellow flower	0.093
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.082
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.006
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.100
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.027
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.013
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.127
	SRR8316907	Gold flowering stage	0.124
	SRR8316908	Gold flowering stage	1.292
SRP132670	SRR6706286	Control	0.124
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.020
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.478
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.083
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.044
	CNS0095597	Whole white alabastrum(diploid) 4	0.163
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.018
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.137
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.262
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.005
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.027
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.207
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.259
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.027
	CNS0095612	Silvery flower (tetraploid) 3	0.034
	CNS0095613	Golden flower (tetraploid) 1	0.016
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.006
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.034
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.053
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.090
	CRR073306	Third green 1	0.040
	CRR073307	Third green 2	0.053
	CRR073308	Third green 3	0.020
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.002
	CRR073311	Second white 3	0.333
	CRR073312	Silver flowering 1	0.009
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.136
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.016
	CRR073318	Tawny withering 1	0.236
	CRR073319	Tawny withering 2	0.053
	CRR073320	Tawny withering 3	0.400