Gene detail

Detail information of GWHGAAZE011811

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267832.1	2.1129E-127	PREDICTED: 39S ribosomal protein L22, mitochondrial [Vitis vinifera]
Swissprot	tr\|P49558\|RK22_ODOSI	8E-18	50S ribosomal protein L22, chloroplastic
trEMBL	tr\|D7U8M4\|D7U8M4_VITVI	8E-128	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI39088.3}
TAIR10	AT4G28360.1	9E-85	Ribosomal protein L22p/L17e family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	73599542	73604839	+
GWHAAZE00000003	mRNA	73599542	73604839	+
GWHAAZE00000003	exon	73599542	73599662	+
GWHAAZE00000003	exon	73599976	73600010	+
GWHAAZE00000003	exon	73600218	73600379	+
GWHAAZE00000003	exon	73602795	73602905	+
GWHAAZE00000003	exon	73603451	73603517	+
GWHAAZE00000003	exon	73604556	73604839	+
GWHAAZE00000003	CDS	73599542	73599662	+
GWHAAZE00000003	CDS	73599976	73600010	+
GWHAAZE00000003	CDS	73600218	73600379	+
GWHAAZE00000003	CDS	73602795	73602905	+
GWHAAZE00000003	CDS	73603451	73603517	+
GWHAAZE00000003	CDS	73604556	73604839	+

Transcript Sequence
>GWHTAAZE011823 ATGGTGGGATGGCACCGATATTTGCAGTCCGTAGTCCGTCAAGTTGGGAAAAGAGTAGAGCACAACTACAATTCAGCTGCCAACTTCTCTTGTTATCAGTCTAATTCATCCCTAGTACATGAAATTGTGGAGTTCACCTTCTACGAACATCTCAAGGGGATCTCCACTTCTAGAAAGTTACTCGCAGATTCTTCTGATGCTGCACCTAGTCCTTCGCCATTGACACCAGTTTTGGCGTTAAATAGTGGAAAAACTGAAGACCAGAAAGCTGTCATTAAGCCTTCAAAAGTTCAAGCAGTTTTAAAAGCTATAAAACAGAGTCCTAAGAAGGTGAACTTGGTTGCTGCATTGGTTCGTGGGATGCGTGTTGAAGATGCCTTGTTGCAGCTGCAAGTGACTGTAAAACGAGCGTCAAAAACAGTCTACCAGGTTATTCATTCAGCCCGGGCGAATGCAACCCACAATCATGGATTAGATCCAGAACGTCTCCTTATTGCCGAGGCGTATGTGGGAAAGGGATACTTCAAAAAGAGAGTATCATACCATTCGAAGGGAAGAAGTGGGATAAAGATGATACCCGAGTGTAGACTGACGGTGGTGGTTCGTGAAATAACCCCCGAAGAGGAGGCGGAGATAGCTAGGCTTAGGGTTAGCAATTTCCTCAAGCTCACTAAGCGTGAAAGGCGTCTTGTTCCTCACAAGCTTATTGAGACTACTCCTATTTGGGACCGTAAAGGCAAAGCTAGAAGAAGCCGTTCATTGGGTGATATGGCTGCTTGA

Network for GWHGAAZE011811

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00237.20	Ribosomal_L22	100	201	1.70E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02890	RP-L22, MRPL22, rplV	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0015934	cellular_component	large ribosomal subunit
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.300
	SRR3591706	second leaf	17.030
	SRR3591707	mature leaf	19.225
	SRR3591708	Shoot apex	36.994
	SRR3591709	Stem	32.266
	SRR3591710	White floral bud	23.046
	SRR3591711	White flower	32.378
	SRR3591712	Green floral bud	30.046
	SRR3591713	Yellow flower	31.673
SRP173429	SRR8316895	Juvenile bud stage	29.580
	SRR8316896	Juvenile bud stage	37.862
	SRR8316897	Juvenile bud stage	17.729
	SRR8316894	Third green stage	12.957
	SRR8316900	Third green stage	31.333
	SRR8316901	Third green stage	33.590
	SRR8316898	Complete white stage	10.499
	SRR8316899	Complete white stage	45.639
	SRR8316903	Complete white stage	16.255
	SRR8316902	Silver flowering stage	12.508
	SRR8316904	Silver flowering stage	13.553
	SRR8316905	Silver flowering stage	6.460
	SRR8316906	Gold flowering stage	28.094
	SRR8316907	Gold flowering stage	27.733
	SRR8316908	Gold flowering stage	29.993
SRP132670	SRR6706286	Control	23.718
	SRR6706287	Light intensity 50%	22.718
	SRR6706288	Light intensity 20%	25.974
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.016
	CNS0095593	Slightly white alabastrum(diploid) 2	31.139
	CNS0095594	Slightly white alabastrum(diploid) 3	35.509
	CNS0095595	Whole white alabastrum(diploid) 2	24.628
	CNS0095596	Whole white alabastrum(diploid) 3	22.686
	CNS0095597	Whole white alabastrum(diploid) 4	17.063
	CNS0095598	Silvery flower (diploied) 1	27.334
	CNS0095599	Silvery flower (diploied) 2	22.889
	CNS0095600	Silvery flower (diploied) 3	27.019
	CNS0095601	Golden flower (diploid) 1	25.552
	CNS0095602	Golden flower (diploid) 2	27.556
	CNS0095603	Golden flower (diploid) 3	30.949
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.106
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.236
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.830
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.482
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.015
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.731
	CNS0095610	Silvery flower (tetraploid) 1	30.776
	CNS0095611	Silvery flower (tetraploid) 2	31.989
	CNS0095612	Silvery flower (tetraploid) 3	25.449
	CNS0095613	Golden flower (tetraploid) 1	20.601
	CNS0095614	Golden flower (tetraploid) 2	26.634
	CNS0095615	Golden flower (tetraploid) 3	22.721
CRA001975	CRR073297	Stem 1	28.288
	CRR073298	Stem 2	26.924
	CRR073299	Stem 3	31.734
	CRR073300	Leaf 1	24.016
	CRR073301	Leaf 2	23.634
	CRR073302	Leaf 3	28.507
	CRR073303	Juvenile bud 1	23.661
	CRR073304	Juvenile bud 2	20.336
	CRR073305	Juvenile bud 3	22.705
	CRR073306	Third green 1	9.584
	CRR073307	Third green 2	6.919
	CRR073308	Third green 3	9.437
	CRR073309	Second white 1	19.196
	CRR073310	Second white 2	16.781
	CRR073311	Second white 3	13.564
	CRR073312	Silver flowering 1	16.600
	CRR073313	Silver flowering 2	16.207
	CRR073314	Silver flowering 3	13.428
	CRR073315	Gold flowering 1	15.013
	CRR073316	Gold flowering 2	20.538
	CRR073317	Gold flowering 3	21.310
	CRR073318	Tawny withering 1	29.615
	CRR073319	Tawny withering 2	25.911
	CRR073320	Tawny withering 3	31.021