Gene detail

Detail information of GWHGAAZE011810

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010649893.1	PREDICTED: probable serine/threonine-protein kinase WNK9 [Vitis vinifera]
Swissprot	tr\|Q9CAV6\|WNK1_ARATH	Serine/threonine-protein kinase WNK1
trEMBL	tr\|F6HDP8\|F6HDP8_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50419.1}
TAIR10	AT3G04910.1	with no lysine (K) kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	73568720	73572590	-
GWHAAZE00000003	mRNA	73568720	73572590	-
GWHAAZE00000003	exon	73568720	73569690	-
GWHAAZE00000003	exon	73569988	73570429	-
GWHAAZE00000003	exon	73570536	73570693	-
GWHAAZE00000003	exon	73571406	73571626	-
GWHAAZE00000003	exon	73571976	73572203	-
GWHAAZE00000003	exon	73572339	73572376	-
GWHAAZE00000003	exon	73572516	73572590	-
GWHAAZE00000003	CDS	73572516	73572590	-
GWHAAZE00000003	CDS	73572339	73572376	-
GWHAAZE00000003	CDS	73571976	73572203	-
GWHAAZE00000003	CDS	73571406	73571626	-
GWHAAZE00000003	CDS	73570536	73570693	-
GWHAAZE00000003	CDS	73569988	73570429	-
GWHAAZE00000003	CDS	73568720	73569690	-

Transcript Sequence
>GWHTAAZE011822 ATGAATGGTTTTGTAGCCCTTAAACAAGACCAAACTGAGTATCTTGAAGTTGATCCTACTGGCAGATATGGAAGGTACAATGAAATTCTTGGCAAAGGAGCTTCAAAGACAGTTTATAGAGGTTTTGATGAGTATGAAGGAATTGAAGTGGCATGGAATCAAGTAAAGCTATATGATTTTCTACAAAGCCCTGAAGATCTTGAGAGATTATATTGTGAAATTCATCTCCTCAAGACCTTAAATCACAGCAACATCATGAAGTTCTACACTTCTTGGGTTGATACAGACAACAGGAACATAAATTTTGTCACAGAAATGTTCACCTCCGGCACTCTCAGACAGTATAGGCAAAAGCACAAGAAGGTTAACATTAGGGCAGTTAAGCATTGGTGCAGGCAGATCTTGAAAGGCCTTTTATACCTCCACAGTCTTGAACCCCCTGTGATCCATAGAGATCTCAAGTGTGATAACATTTTTGTTAATGGCAACCAAGGGGAGGTGAAGATTGGGGATTTGGGCCTTGCTGCAATTCTCCGTAAATCACACGCTGCGCGATGTGTTGGAACACCAGAGTTCATGGCTCCAGAGGTTTATGCAGAGGAATACAATGAATTAGTAGACATATATGCCTTTGGAATGTGCATTTTGGAAATGGTTACCTTTGAATATCCATATAGTGAATGCACCAACCCTGCTCAAATCTACAAGAAAGTTACCTCTGGTAAAAAGCCAGATGCTCTTTACAAAGTCATGGATCCTGAGGTAAGACGGTTTGTTGAGAAGTGCTTAGCAACTGTCTCTTCTAGACTTACCGCAAGGGAGCTTCTTAATGACCCTTTTCTTCAAATAGATGATTATAGATTTGATTCGAGCCAACTGGAGTACTATACAGACTTTGATGGAATGGGCCCTATGTTGAGACATCCTTTGTTACAAGTTCATTGCACTAATGGCTCTTTGACAGATGGATTTTATGCTAATTATCTTGGTTATGAGCCAGAGAATGAGTTTGATTACCATCCACATGATTTTGAACGAAATGAAATCGAAGTATTCACAAGTCATGACGATGAGCGGTTGGAAAATGTTGACATTACCATCAAGGGGAACAGGAGAGAAGATGATGGCATTTTTCTAAGGCTCAGAATGGCAGACAAAGAAGGCCATATCAGAAACATATACTTCCCTTTCGACATGGAGACTGACACAGCACTAAGTGTTGCCTCTGAAATGGTGGCTGAGCTAGATATAACTGAGCAAGATGTGACCAAGATCGCAGATATGATTGACAGTGAGATCATTTCGTTGGTACCCGAGTGGAAGAGGGGGCTACTAGGCCCGGAAGAAAGACTCAATAACGGTTACTGTCATAATTGTGCTTCCAATAATTCTCTTGCAAACTATCTCTCCCCGCACAATCCCGGGGCCAAGAACTTACAAGTCCTTCAATGCTCGAAACATGGGTGCACTGCGGTCCATGGCCGGTTTGAAGAAATCACCTACCAATTTGAGGGATCCGAGCAATGTCTCACTGAAGGTGCACCGGTTGTGTCTAGCCAATCTGATGGCATACACTATTCCGATATTTGGGCTCGACAAGATGGGCCCGATGCAAGCTCACAAGATGAAGAATCAACAGTGGATGAATCCACAAACGGGAAAGAAGAGAGGGTCATAATTATGGACAACTGTCATCCTTCAGTGGCTCAAGATCTAGCCGAGGACTACGAGAACGAGATAAGGCAAGAAATGAGGTGGCTAAAGGCCAAGTACCAAATGCAATTGAGAGAGCTTAGAGATCAGCAACTAGGAGTTGTACCCAAAGGTTCAAATGCGTATTGGGACAGAAACGGAACCAAGAAAGATAGATTTCTGTCCATTAAAACACGAGTGGAAGAAGAGAGTGACGAAGAACAAATGAAATCTTTTGCCTCGGGGAAGCATTTCGGTTCGTGGTCACCTGTTGAGCCAGAGAGGAAATGTGGTGACCAAAGGGTGCAAAATTGCGAAGGAGCTTATGGGTCTTGTAGCCCAGTGAATATGGTGACTGCTAAGAGTTTCTATACAGGTGCATTGCTTCCACAGTCACTTCATAGGGCTACTTCTCTTCCTGTTGATGCTGTAGATTTCTAA

Network for GWHGAAZE011810

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	27	281	2.50E-50
PF12202.9	OSR1_C	378	432	4.50E-07

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	WNK_NRBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.736
	SRR3591706	second leaf	29.053
	SRR3591707	mature leaf	49.885
	SRR3591708	Shoot apex	22.310
	SRR3591709	Stem	86.492
	SRR3591710	White floral bud	98.785
	SRR3591711	White flower	149.592
	SRR3591712	Green floral bud	19.027
	SRR3591713	Yellow flower	54.798
SRP173429	SRR8316895	Juvenile bud stage	19.092
	SRR8316896	Juvenile bud stage	14.136
	SRR8316897	Juvenile bud stage	8.762
	SRR8316894	Third green stage	4.837
	SRR8316900	Third green stage	8.168
	SRR8316901	Third green stage	10.075
	SRR8316898	Complete white stage	38.301
	SRR8316899	Complete white stage	15.115
	SRR8316903	Complete white stage	63.320
	SRR8316902	Silver flowering stage	45.934
	SRR8316904	Silver flowering stage	62.264
	SRR8316905	Silver flowering stage	25.577
	SRR8316906	Gold flowering stage	65.600
	SRR8316907	Gold flowering stage	55.699
	SRR8316908	Gold flowering stage	77.215
SRP132670	SRR6706286	Control	11.394
	SRR6706287	Light intensity 50%	13.569
	SRR6706288	Light intensity 20%	12.436
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.189
	CNS0095593	Slightly white alabastrum(diploid) 2	11.368
	CNS0095594	Slightly white alabastrum(diploid) 3	16.366
	CNS0095595	Whole white alabastrum(diploid) 2	10.261
	CNS0095596	Whole white alabastrum(diploid) 3	6.100
	CNS0095597	Whole white alabastrum(diploid) 4	9.987
	CNS0095598	Silvery flower (diploied) 1	43.056
	CNS0095599	Silvery flower (diploied) 2	36.056
	CNS0095600	Silvery flower (diploied) 3	72.060
	CNS0095601	Golden flower (diploid) 1	22.525
	CNS0095602	Golden flower (diploid) 2	55.299
	CNS0095603	Golden flower (diploid) 3	54.749
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.051
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.791
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.661
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.815
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.498
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.943
	CNS0095610	Silvery flower (tetraploid) 1	52.059
	CNS0095611	Silvery flower (tetraploid) 2	43.714
	CNS0095612	Silvery flower (tetraploid) 3	41.594
	CNS0095613	Golden flower (tetraploid) 1	40.849
	CNS0095614	Golden flower (tetraploid) 2	48.069
	CNS0095615	Golden flower (tetraploid) 3	87.088
CRA001975	CRR073297	Stem 1	22.760
	CRR073298	Stem 2	14.618
	CRR073299	Stem 3	19.731
	CRR073300	Leaf 1	5.816
	CRR073301	Leaf 2	6.715
	CRR073302	Leaf 3	5.341
	CRR073303	Juvenile bud 1	6.415
	CRR073304	Juvenile bud 2	15.087
	CRR073305	Juvenile bud 3	10.863
	CRR073306	Third green 1	93.916
	CRR073307	Third green 2	76.273
	CRR073308	Third green 3	86.258
	CRR073309	Second white 1	68.525
	CRR073310	Second white 2	62.486
	CRR073311	Second white 3	52.359
	CRR073312	Silver flowering 1	53.324
	CRR073313	Silver flowering 2	56.180
	CRR073314	Silver flowering 3	35.257
	CRR073315	Gold flowering 1	51.977
	CRR073316	Gold flowering 2	59.940
	CRR073317	Gold flowering 3	22.988
	CRR073318	Tawny withering 1	26.177
	CRR073319	Tawny withering 2	21.748
	CRR073320	Tawny withering 3	24.513