Gene detail

Detail information of GWHGAAZE011804

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	9.8265E-136	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FID8\|Y5900_ARATH	9E-108	Putative receptor-like protein kinase At5g39000 (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	4E-136	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT5G39000.1	5E-91	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	73454160	73456757	+
GWHAAZE00000003	mRNA	73454160	73456757	+
GWHAAZE00000003	exon	73454160	73455747	+
GWHAAZE00000003	exon	73456649	73456757	+
GWHAAZE00000003	CDS	73454160	73455747	+
GWHAAZE00000003	CDS	73456649	73456737	+
GWHAAZE00000003	three_prime_UTR	73456738	73456757	+

Transcript Sequence
>GWHTAAZE011816 ATGCACAACGAAGTCAAAACAAATGGTGCATTTGAATCTCATCTTCCTATTTTATGTATTCACAAGCAACTTAACTCTTCAGTCATTTCCTCCAAGCTTTTCTCACAAATCCTTTGGGATCCACGTACCATGGTTGTTACTCGAGTTTTGATTCAACTAGTCTTCCTCTTCATCTTCTTCATCCATAATTCATTGTTCAGCTCTGCAAATTTCCCTGTTGAAGACATTCCTGTCTATAACAAGTACTTATACCCCGAGTCATCAACTCCAAAGCCACGAAAATGGTTGATTTTTGGCCGGGGGAACCCGATTGCAACTTGTTTGATACTCATAATCACACTGTTGAATATCATTGTTTATAAATTGCGGGAACTTCAAGAAGCAAATCTTGATGAGGAGCTAAACTTACAGTCGCCTGTGCCATCAGAATGGTCATGCCGTCGCTTTTCACTTGCCAAAATCTTATCGGCCACGCATAACTTTAGTGATGAATTGGTCCTCGGGCAAGGCGGATTTGGAAAAGTGTACAAAGGGGTTATTGACAATGGGACAGCTACGGTTGCCATTAAGCGGTTGAATCATATGTCCAAACAAGGAGCACGTGAATTTTGGAATGAAATTGAGATGCTGTCCAAGTTTCGACACAGTCATCTCGTCTCACTAATTGGATGCTGTAACCTTCAGAAAGAGATGATCATCGTGTATGAATACATGGTCCACGGAACCTTAGCCGATCATTTGCACAAAAAGGTTACAAATGGTAGCAGTGGTAATTCCACTCTATCTTGGGTTCAACGGCTCAAAATTTGCATTGGGGCTGCACGTGGATTGGAATATCTTCATACCGGCACAGGTGTTACAGAAAGAGTTATACATCGTGATGTGAAGAGTTCAAACATACTACTGGATGCGAATTTTGAGGTTAGGATTTCAGACTTTGGGATGTCTAAGATCGGTCCGGCCAATATGGCAATCACCCATGTAAGTACTAACGTCAAAGGCACATTCGGGTATGTGGATCCGGAATATTTCTTGACCCGTAAGCTGACTAGAAAATCCGACGTTTATTCCTTTGGGGTTGTACTGTTCGAAGTGTTGTGTGGGAGACCGGTCATCGATTTGAGACTCGATGATGAGCAACGGGGACTTGCTGGATGGGCTCAACAAAATGTCAAAGACGGGACACTGGATCAAATTATCGACCTGAGCTTGACAGGGCAAATATTGCCTGATTCATTGAAAATGTTTGTGCAAATAGCGGATCAATGCCTGCATATGTTTTCGAAGAAACGCCCCACAATGGCCGAGGTTGTAGTCTCCCTTGAGCTTGCGTTGGCATTGCAAGAGAGAGTAGATTCTTTTATTTACAAGGAGTTTTCTAATGACAACAAAGAGCATCCGAATTCTCCAACAGAAAATGAAGGCCTTAATGATCTTAACAATGATTCGCATCCGGAGGAGCAAATGGATGAAATTATACAGCTGGGTCATGGAAGAAACGAACATCCTCATGCAAAGCCTATGAAAAATAGGGAATTGAAGAGGATTGTACGTAAGGCTTTTAAGGGAATGGCTCAGGCGATCTCAGACAATCCAAAACCAAAAGCAAGTGAGCAGCTAAACTCGAACAGTTCGAAGCACAAGCATATGGGGCCATGTTGTAAGCTATCCTATTAGAATTGTTGAAATAATAACCC

Network for GWHGAAZE011804

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	166	440	9.90E-50

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.149
	SRR3591706	second leaf	0.131
	SRR3591707	mature leaf	0.645
	SRR3591708	Shoot apex	0.538
	SRR3591709	Stem	0.169
	SRR3591710	White floral bud	1.797
	SRR3591711	White flower	0.343
	SRR3591712	Green floral bud	0.347
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.556
	SRR8316896	Juvenile bud stage	1.495
	SRR8316897	Juvenile bud stage	0.689
	SRR8316894	Third green stage	1.004
	SRR8316900	Third green stage	0.479
	SRR8316901	Third green stage	0.788
	SRR8316898	Complete white stage	0.156
	SRR8316899	Complete white stage	1.304
	SRR8316903	Complete white stage	0.300
	SRR8316902	Silver flowering stage	0.159
	SRR8316904	Silver flowering stage	0.225
	SRR8316905	Silver flowering stage	0.053
	SRR8316906	Gold flowering stage	0.111
	SRR8316907	Gold flowering stage	0.062
	SRR8316908	Gold flowering stage	0.040
SRP132670	SRR6706286	Control	1.250
	SRR6706287	Light intensity 50%	0.826
	SRR6706288	Light intensity 20%	0.753
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.362
	CNS0095593	Slightly white alabastrum(diploid) 2	0.633
	CNS0095594	Slightly white alabastrum(diploid) 3	1.791
	CNS0095595	Whole white alabastrum(diploid) 2	0.718
	CNS0095596	Whole white alabastrum(diploid) 3	0.228
	CNS0095597	Whole white alabastrum(diploid) 4	0.411
	CNS0095598	Silvery flower (diploied) 1	1.849
	CNS0095599	Silvery flower (diploied) 2	0.928
	CNS0095600	Silvery flower (diploied) 3	0.236
	CNS0095601	Golden flower (diploid) 1	0.835
	CNS0095602	Golden flower (diploid) 2	0.655
	CNS0095603	Golden flower (diploid) 3	0.803
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.137
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.236
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.284
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.210
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.051
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.027
	CNS0095610	Silvery flower (tetraploid) 1	0.038
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.067
	CNS0095613	Golden flower (tetraploid) 1	0.027
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.426
	CRR073298	Stem 2	0.402
	CRR073299	Stem 3	0.862
	CRR073300	Leaf 1	0.283
	CRR073301	Leaf 2	0.476
	CRR073302	Leaf 3	0.606
	CRR073303	Juvenile bud 1	0.292
	CRR073304	Juvenile bud 2	0.477
	CRR073305	Juvenile bud 3	0.309
	CRR073306	Third green 1	0.042
	CRR073307	Third green 2	0.160
	CRR073308	Third green 3	0.033
	CRR073309	Second white 1	0.077
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.198
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.230
	CRR073316	Gold flowering 2	4.679
	CRR073317	Gold flowering 3	2.326
	CRR073318	Tawny withering 1	1.108
	CRR073319	Tawny withering 2	1.590
	CRR073320	Tawny withering 3	0.642