Gene detail

Detail information of GWHGAAZE011802

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99061.1	2.0888E-129	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068TS25\|A0A068TS25_COFCA	8E-130	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99061.1}
TAIR10	AT3G22450.1	2E-64	Ribosomal L18p/L5e family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	73413299	73414426	-
GWHAAZE00000003	mRNA	73413299	73414426	-
GWHAAZE00000003	exon	73413299	73414426	-
GWHAAZE00000003	CDS	73413299	73414426	-

Transcript Sequence
>GWHTAAZE011814 ATGGCACTAATGCTCTTAAGAAGAGGCACAACTTTGATATCATTGGAGAATTCTTGTTTCCTTTTGAGGGGATTTAGTTTTTCATCCAGAGTCCCAATGATTCTCGATAATGAAAGTGATTCAACTCAATTTATGTCGGTTAATAACAAGGGAATCCCTTCGGCAAATGATGGTAGCCGGCTTCATTTTTCGCCATTGTTATCTAATAGTGGAACCCACAAAAAGGATTTCAAAATTGAGCTTGTTGATAATGAAACTTGGCGTGTTTCCACTGGTCTAGCTGAGGCATGGAGAGGCACTGCCGGGCTGTCGGGATCAAATGCCTTGAAATCTGAAGTGGCCGACGAGGCGGTTGGCGATAAACAGCGAAACAAGGAGGACCCTGATTTCGATGAGATTGAAGACATGAGAATTCGCGGTAATCTTTTTTACAAGCTTGACAAGGACTCCAGAGAGTTTGAAGAGTACAATTTTGATTTTCACCGAAAGAAATCTTGGAAGAAGAATAGGGGCGATCAAACAGAAAGCAAAAAGAACAAGAGCCCAGATTGTAAATTGACTTCTGCAGTTGAAAAACGTTCAATTTTGAAGCATAATGATGAGCAAAAAGAAAGCAAAAGGGAGGACAAGTTCAGTTCTAACGCTGGGTTGGGAGAAAGATTTTCCGAGCTCGATATGAACCATTTCGTTTCACTGGACAATTATGGTGGAAAGAAGCAAAGAACTCTCACTTTCAATCAACTTACAGCTCCTTACCACGAACCATTTTGCTTGGACATTTACATATCGAAAGCTTCTGTACGTGCGTGTGTTATTCATCGAGCAACCAGCAACGTGGTTGCTGTGGCACATTCTATTTCGAAGGACATGAAATTTGATCTTGGGTCGACTAAGAATGCGACTGCTTGTGCTGCTGTGGGCCAAATTTTAGCTCAGAGAGCGTTGGCTGATGATATTCATAATGTGGTTTATACACCTAGAAAAGGGGAGAAGTTGGAAGGGAAACTTCAGGTTGTTCTTCAGTCCATCATCAATAATGGTATTAATGTGAAGGTCAAAATTAAGCAAAGGAAGTTCAAGAAATCTGGTCTTAAAAAACACGGCTTTGGAGTATCGATGACTGGTTGA

Network for GWHGAAZE011802

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00861.23	Ribosomal_L18p	258	349	5.30E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02881	RP-L18, MRPL18, rplR	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.989
	SRR3591706	second leaf	3.490
	SRR3591707	mature leaf	3.383
	SRR3591708	Shoot apex	5.784
	SRR3591709	Stem	5.877
	SRR3591710	White floral bud	8.960
	SRR3591711	White flower	9.151
	SRR3591712	Green floral bud	6.642
	SRR3591713	Yellow flower	6.466
SRP173429	SRR8316895	Juvenile bud stage	6.135
	SRR8316896	Juvenile bud stage	9.069
	SRR8316897	Juvenile bud stage	3.605
	SRR8316894	Third green stage	3.963
	SRR8316900	Third green stage	7.932
	SRR8316901	Third green stage	8.827
	SRR8316898	Complete white stage	3.463
	SRR8316899	Complete white stage	12.109
	SRR8316903	Complete white stage	6.353
	SRR8316902	Silver flowering stage	3.791
	SRR8316904	Silver flowering stage	7.362
	SRR8316905	Silver flowering stage	3.051
	SRR8316906	Gold flowering stage	7.099
	SRR8316907	Gold flowering stage	6.900
	SRR8316908	Gold flowering stage	8.045
SRP132670	SRR6706286	Control	8.831
	SRR6706287	Light intensity 50%	8.912
	SRR6706288	Light intensity 20%	9.308
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.663
	CNS0095593	Slightly white alabastrum(diploid) 2	6.057
	CNS0095594	Slightly white alabastrum(diploid) 3	3.970
	CNS0095595	Whole white alabastrum(diploid) 2	4.760
	CNS0095596	Whole white alabastrum(diploid) 3	3.403
	CNS0095597	Whole white alabastrum(diploid) 4	4.174
	CNS0095598	Silvery flower (diploied) 1	5.696
	CNS0095599	Silvery flower (diploied) 2	5.434
	CNS0095600	Silvery flower (diploied) 3	5.340
	CNS0095601	Golden flower (diploid) 1	6.847
	CNS0095602	Golden flower (diploid) 2	5.329
	CNS0095603	Golden flower (diploid) 3	3.786
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.655
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.458
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.774
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.094
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.279
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.803
	CNS0095610	Silvery flower (tetraploid) 1	3.285
	CNS0095611	Silvery flower (tetraploid) 2	4.150
	CNS0095612	Silvery flower (tetraploid) 3	2.842
	CNS0095613	Golden flower (tetraploid) 1	1.737
	CNS0095614	Golden flower (tetraploid) 2	3.131
	CNS0095615	Golden flower (tetraploid) 3	2.613
CRA001975	CRR073297	Stem 1	8.592
	CRR073298	Stem 2	7.599
	CRR073299	Stem 3	6.455
	CRR073300	Leaf 1	9.481
	CRR073301	Leaf 2	8.779
	CRR073302	Leaf 3	3.206
	CRR073303	Juvenile bud 1	5.018
	CRR073304	Juvenile bud 2	2.409
	CRR073305	Juvenile bud 3	4.410
	CRR073306	Third green 1	0.774
	CRR073307	Third green 2	0.901
	CRR073308	Third green 3	0.557
	CRR073309	Second white 1	0.641
	CRR073310	Second white 2	1.648
	CRR073311	Second white 3	0.911
	CRR073312	Silver flowering 1	0.504
	CRR073313	Silver flowering 2	0.762
	CRR073314	Silver flowering 3	2.032
	CRR073315	Gold flowering 1	1.297
	CRR073316	Gold flowering 2	3.198
	CRR073317	Gold flowering 3	1.219
	CRR073318	Tawny withering 1	5.983
	CRR073319	Tawny withering 2	6.785
	CRR073320	Tawny withering 3	4.820