Gene detail

Detail information of GWHGAAZE011773

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011090685.1	0	PREDICTED: serine/threonine-protein kinase HT1-like [Sesamum indicum]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	4E-66	Serine/threonine-protein kinase HT1
trEMBL	tr\|A0A068TST0\|A0A068TST0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99092.1}
TAIR10	AT3G22750.1	7E-175	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	72993924	73001297	+
GWHAAZE00000003	mRNA	72993924	73001297	+
GWHAAZE00000003	exon	72993924	72994305	+
GWHAAZE00000003	exon	72997075	72997196	+
GWHAAZE00000003	exon	72998772	72998974	+
GWHAAZE00000003	exon	72999666	72999840	+
GWHAAZE00000003	exon	73000204	73000338	+
GWHAAZE00000003	exon	73001091	73001297	+
GWHAAZE00000003	CDS	72993924	72994305	+
GWHAAZE00000003	CDS	72997075	72997196	+
GWHAAZE00000003	CDS	72998772	72998974	+
GWHAAZE00000003	CDS	72999666	72999840	+
GWHAAZE00000003	CDS	73000204	73000338	+
GWHAAZE00000003	CDS	73001091	73001297	+

Transcript Sequence
>GWHTAAZE011785 ATGGATTTGAAACCAAGTGAGGAAATTGGAGAGGTCCCAAAAAATGAGAAACAAGAAAACCAAGAGGAGGGGGGAACGGGCTCGAACGCGAAGGGTAAGGGAAGTGTAAGTATGGTGGACCAAAAAGATTTATTGGGAAAACCTTCAGGGAGGTTTAGTAGCAAAGATATGTTTTTTAGGGCAGATAAAATTGATCTCAAAAGCCTAGATGTTCAATTGGAGAAGCACTTGAGCAGGGTTTGGTCAAGGAATGTAGAGTCCCAGCCTAAAGCTACGGAATTGTGGGAGATTGATCCAGCTAAATTGGATATAAGATACCTTATTGCAAGGGGCACCTATGGTACTGTTTATAGGGGTACTTACGATAACCAAGATGTTGCAGTGAAGCTGCTGGATTGGGGAGAGGAAGGGATGGCGACTAATGCTGAAACTGCTGCCTTGAGGGCATCATTTCGGCAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAATTTGTAGGTGCTTCAATGGGGACTTCAAACCTTAAGATTCCGTCCAAAGACCCTTCAAGTGAAACAAACCTTCCATCGAGAGCATGTTGTGTGGTTGTGGAATTCCTTCCAGGAGGGACCCTGAAAAACTTCTTATACAAAAATAGGAAAAAGAAACTTGCATACAAAATTGTCGTTCAACTTGCTTTGGATCTCTCTAGAGGATTGAGCTATCTACATTCACAAAAGATTGTACATCGTGATGTCAAGGCTGAGAATATGTTGTTAGACAATCAGAGAAATTTAAAAATCGCGGATTTTGGCGTTGCTCGTGTGGAAGCTCAGAATCCTAGAGACATGACTGGTGAAACTGGAACCCTTGGATATATGGCCCCTGAGGTTCTTGATGGCAAGCCTTATAACAGAAAGTGTGACGTCTACAGCTTCGGCATATGCTTATGGGAAATTTATTGCTGTGATCTTCCTTACACCAATCTCAGCTTTGCTGAAGTTTCATATTCAGTTGTTCGACAGAATTTAAGGCCAGATATACCGAGATGTTGTCCGAATTCATTTGCAAACATAATGAGGAAATGCTGGGACACAAACCCGGACAAACGCCCAGACATGGACGAGGTAGTGAAGTTGTTGGAAGCAATTGATACGAGCAAGGGAGGAGGAATGATCCCCGAGGACCAAGCTGGCGGCTGTTTTTGTTTTGCTCCGACTCGTGGTCCGTGA

Network for GWHGAAZE011773

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	106	378	3.90E-60

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.596
	SRR3591706	second leaf	19.462
	SRR3591707	mature leaf	46.565
	SRR3591708	Shoot apex	23.212
	SRR3591709	Stem	76.780
	SRR3591710	White floral bud	278.754
	SRR3591711	White flower	95.289
	SRR3591712	Green floral bud	196.259
	SRR3591713	Yellow flower	95.709
SRP173429	SRR8316895	Juvenile bud stage	56.228
	SRR8316896	Juvenile bud stage	103.356
	SRR8316897	Juvenile bud stage	49.216
	SRR8316894	Third green stage	41.573
	SRR8316900	Third green stage	140.239
	SRR8316901	Third green stage	144.197
	SRR8316898	Complete white stage	22.552
	SRR8316899	Complete white stage	70.256
	SRR8316903	Complete white stage	35.073
	SRR8316902	Silver flowering stage	45.524
	SRR8316904	Silver flowering stage	61.592
	SRR8316905	Silver flowering stage	33.301
	SRR8316906	Gold flowering stage	156.380
	SRR8316907	Gold flowering stage	115.008
	SRR8316908	Gold flowering stage	120.122
SRP132670	SRR6706286	Control	88.460
	SRR6706287	Light intensity 50%	90.629
	SRR6706288	Light intensity 20%	82.990
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	125.534
	CNS0095593	Slightly white alabastrum(diploid) 2	93.543
	CNS0095594	Slightly white alabastrum(diploid) 3	129.061
	CNS0095595	Whole white alabastrum(diploid) 2	211.806
	CNS0095596	Whole white alabastrum(diploid) 3	245.017
	CNS0095597	Whole white alabastrum(diploid) 4	322.434
	CNS0095598	Silvery flower (diploied) 1	72.657
	CNS0095599	Silvery flower (diploied) 2	101.947
	CNS0095600	Silvery flower (diploied) 3	67.088
	CNS0095601	Golden flower (diploid) 1	79.163
	CNS0095602	Golden flower (diploid) 2	101.761
	CNS0095603	Golden flower (diploid) 3	96.435
	CNS0095604	Slightly white alabastrum(tetraploid) 1	151.424
	CNS0095605	Slightly white alabastrum(tetraploid) 2	155.821
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.368
	CNS0095607	Whole white alabastrum(tetraploid) 1	321.652
	CNS0095608	Whole white alabastrum(tetraploid) 2	390.300
	CNS0095609	Whole white alabastrum(tetraploid) 3	180.164
	CNS0095610	Silvery flower (tetraploid) 1	88.628
	CNS0095611	Silvery flower (tetraploid) 2	79.227
	CNS0095612	Silvery flower (tetraploid) 3	132.521
	CNS0095613	Golden flower (tetraploid) 1	97.474
	CNS0095614	Golden flower (tetraploid) 2	79.089
	CNS0095615	Golden flower (tetraploid) 3	132.019
CRA001975	CRR073297	Stem 1	53.443
	CRR073298	Stem 2	49.444
	CRR073299	Stem 3	20.307
	CRR073300	Leaf 1	117.786
	CRR073301	Leaf 2	85.801
	CRR073302	Leaf 3	36.647
	CRR073303	Juvenile bud 1	87.450
	CRR073304	Juvenile bud 2	62.596
	CRR073305	Juvenile bud 3	30.327
	CRR073306	Third green 1	43.618
	CRR073307	Third green 2	38.035
	CRR073308	Third green 3	45.973
	CRR073309	Second white 1	41.182
	CRR073310	Second white 2	60.714
	CRR073311	Second white 3	53.201
	CRR073312	Silver flowering 1	97.995
	CRR073313	Silver flowering 2	80.870
	CRR073314	Silver flowering 3	84.928
	CRR073315	Gold flowering 1	77.483
	CRR073316	Gold flowering 2	68.563
	CRR073317	Gold flowering 3	34.224
	CRR073318	Tawny withering 1	100.693
	CRR073319	Tawny withering 2	112.633
	CRR073320	Tawny withering 3	76.567